PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G242200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 161aa    MW: 17954.4 Da    PI: 8.8279
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G242200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.5e-18856254
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                        +ykGVr++  +g+Wv+eIr+p        +r +lg++ t+e Aa+a+++a+k l+
  Brast09G242200.1.p  8 RYKGVRQRN-WGSWVSEIRHP-----AmkTRLWLGTYPTEERAARAYDEAAKMLN 56
                        7*****998.**********8.....345**********************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-28867No hitNo description
SMARTSM003806.8E-30871IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-19867IPR016177DNA-binding domain
PROSITE profilePS5103221.325865IPR001471AP2/ERF domain
PfamPF008478.9E-13856IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-29866IPR001471AP2/ERF domain
PRINTSPR003672.7E-9920IPR001471AP2/ERF domain
PRINTSPR003672.7E-93147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MPKVQLERYK GVRQRNWGSW VSEIRHPAMK TRLWLGTYPT EERAARAYDE AAKMLNRPAA  60
RTNFPASVDV TGSLDEYNRA KVEKYRLPPS SSSTTMMVAA PVPSSQEGAK ALAPSPSLTR  120
GGDAMIMTED EQFIEEMIRE MTHYGPIEFV PISSVRSTTD *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G242200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579417.16e-54ethylene-responsive transcription factor ERF003
TrEMBLI1J2V32e-72I1J2V3_BRADI; Uncharacterized protein
STRINGBRADI5G24710.14e-73(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.15e-23ERF family protein