PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G248000.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 214aa    MW: 22354.1 Da    PI: 8.8885
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G248000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.4e-081439227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        kt+ C  +     C++Gd+C+FaHg+
  Brast09G248000.2.p 14 KTRMCTKYNTAEGCRFGDKCHFAHGE 39
                        9***********************96 PP
2zf-CCCH40.35.4e-13179204127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ykt++C +f++ GtC +GdrC+FaHg+
  Brast09G248000.2.p 179 YKTKICENFLK-GTCTFGDRCHFAHGE 204
                         9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.4E-131142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7511240IPR000571Zinc finger, CCCH-type
SMARTSM003560.121239IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-81342IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-41439IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.67E-1375151IPR004088K Homology domain, type 1
SMARTSM003225.0E-1080150IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.103.8E-1480150IPR004088K Homology domain, type 1
PROSITE profilePS5008413.54481145IPR004088K Homology domain, type 1
PfamPF000136.4E-1083145IPR004088K Homology domain, type 1
CDDcd001051.27E-1283145No hitNo description
SuperFamilySSF902299.68E-10177208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-15177208IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.92178205IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-9178204IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-10179204IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDHGANSHPA PAGKTRMCTK YNTAEGCRFG DKCHFAHGER ELGRTTYESS YAPPMGGRFG  60
SRHEPPPPAM TGPPTGSFGA SATAKISVDA ALAGGIIGKS GVNTKQICRV TGVKLSIRDH  120
ESDPNLKNIE LEGNFDQIKQ ASDMVGELIA TISASTPLKN PAGAVPPAGR GGPGGRSNYK  180
TKICENFLKG TCTFGDRCHF AHGENEQRKG AAV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G248000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580767.11e-138zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK11e-104C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLI1J3341e-137I1J334_BRADI; Uncharacterized protein
STRINGBRADI5G25340.11e-138(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-57C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]