PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast09G258700.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 237aa MW: 24087.3 Da PI: 8.1232

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast09G258700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.8	3.5e-36	51	109	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 k+++++cprC s ntkfCyynnys++qPr+fC+aCrryWt+GG+lrnvPvGg++r +++ Brast09G258700.1.p 51 KQQQVECPRCGSGNTKFCYYNNYSTAQPRHFCRACRRYWTHGGSLRNVPVGGACRSRHR 109 5799***************************************************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-22	52	105	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.7E-31	53	108	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.661	55	109	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	57	93	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MAPDAAASSL RLPAAATGSS AGTLPDQAPP LLPQGDHQAA AVNGNGNGNG KQQQVECPRC 60 GSGNTKFCYY NNYSTAQPRH FCRACRRYWT HGGSLRNVPV GGACRSRHRD AAASGNANNN 120 NKRRSRRAGS DNSSSSSAAP PSAAPNQLPP TAALMFPFLS DGAAFFLPPQ YDLGLGAGSA 180 AATPSAFSWP LYDGGLGAAP WDDGTLSGAA AGATPGAWGE DEFTGLDLSW PPPAGN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast09G258700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012620	3e-45	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003580828.1	1e-84	dof zinc finger protein DOF1.7
TrEMBL	I1J3D7	3e-83	I1J3D7_BRADI; Uncharacterized protein
STRING	BRADI5G26240.1	5e-84	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14047	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	9e-29	Dof family protein

Link Out ? help Back to Top
Phytozome	Brast09G258700.1.p