PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G268300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 505aa    MW: 54581.6 Da    PI: 5.6977
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G268300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.65.7e-24108208299
                         EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          k+lt+sd+++ g +++p+ +a++          ++ +  tl+++d+ gr We+++iyr++++r++lt+GW++Fv+a+ L +gD vvF+  
  Brast09G268300.1.p 108 AKQLTQSDANNGGGFSVPRFCADSVfpaldfaADPPVQ--TLRMRDLLGRHWEFRHIYRGTPRRHLLTTGWSRFVNAKLLVAGDAVVFM-- 194
                         69****************9999999*****96555555..8************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         +r ++el+ +v+r+
  Brast09G268300.1.p 195 RRPDGELLAGVRRT 208
                         679********997 PP
2Auxin_resp52.22.7e-18236310182
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                         aa++a+++ +F+v+Y+Pr+++ eFvv++++ve+al +++ +G++++m+f   + ++ ++  G+v++v +        S Wr+L
  Brast09G268300.1.p 236 AARRAAQGAPFTVTYYPRQGAGEFVVPRREVEDALISPWEPGTQVRMQFLHPEDRRSEWiNGVVRAVDH--------SIWRML 310
                         68899********************************************87777777776999999876........555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.58E-27102212IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-31106210IPR015300DNA-binding pseudobarrel domain
CDDcd100175.53E-18106207No hitNo description
SMARTSM010197.3E-12107209IPR003340B3 DNA binding domain
PROSITE profilePS5086312.153107209IPR003340B3 DNA binding domain
PfamPF023626.6E-21108208IPR003340B3 DNA binding domain
PfamPF065071.6E-13236315IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MAEQQQDPPV VVDRDVWLAC ATPLSRLPAV GAQVYYFPHG HSEQCPAALA APLPQPHLFP  60
CTVTAVSLSA DAGTDEPYAT ISLVPGPHRP VGDPAPHHAV GPGFAHYAKQ LTQSDANNGG  120
GFSVPRFCAD SVFPALDFAA DPPVQTLRMR DLLGRHWEFR HIYRGTPRRH LLTTGWSRFV  180
NAKLLVAGDA VVFMRRPDGE LLAGVRRTPR YPVSQDPAEP PRNARARVPT QEVEDAARRA  240
AQGAPFTVTY YPRQGAGEFV VPRREVEDAL ISPWEPGTQV RMQFLHPEDR RSEWINGVVR  300
AVDHSIWRML EIDWDESAPP SLKTRHVNAW QVQLVGCPPL LKRLRIPEPI APLIPGDAAM  360
ADPLAGPGSQ YMTMLLGSPI PAGMQGARQD FLTDLPSSST GMLTTQLLFP SDHPIPPSPG  420
GGSSEVLNPE NGSPPQFPEE IRTIQLFGTT ITSAMQITTN GSNEEVSQIP AAAVDGTANE  480
DACAASPLDF PLLNGNDGHN QNGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-581133350388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G268300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579544.10.0auxin response factor 13
RefseqXP_010240662.10.0auxin response factor 13
SwissprotQ7XSS91e-149ARFM_ORYSJ; Auxin response factor 13
TrEMBLI1J3S50.0I1J3S5_BRADI; Auxin response factor
STRINGBRADI5G27400.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.16e-92auxin response factor 17
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]