PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast10G006600.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 176aa MW: 19236.6 Da PI: 8.836

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast10G006600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28	4.6e-09	68	117	2	51
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 ++l+r rr+++NRe+ArrsR+RK+ +ee + ++L a N++L+ +l + Brast10G006600.1.p 68 ERLRRLRRRISNRESARRSRKRKQRHLEEQRATEAALRAGNRDLAARLRH 117 5799*****************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.2E-5	64	146	No hit	No description
SMART	SM00338	0.0037	67	131	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.875	69	119	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.78E-5	70	120	No hit	No description
PROSITE pattern	PS00036	0	74	89	IPR004827	Basic-leucine zipper domain
CDD	cd14702	1.52E-10	77	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MAALEMEMPM LPFFPDDIDA FLADIGLGFD DHEAPTPPPA LCTSPEEETS AGTVGGATDA 60 GAGDDDRERL RRLRRRISNR ESARRSRKRK QRHLEEQRAT EAALRAGNRD LAARLRHARA 120 RAAFAAMANA RLRSEAHALS LRLQRLSSFF PVSGAGTQAP AALLHHQDAF FSFSC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	89	RRRISNRESARRSRKRK
2	83	89	RRSRKRK
3	83	90	RRSRKRKQ
4	85	90	SRKRKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast10G006600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003579093.2	2e-42	ocs element-binding factor 1
TrEMBL	A0A3B6LFC2	4e-26	A0A3B6LFC2_WHEAT; Uncharacterized protein
STRING	BRADI4G00810.1	8e-42	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15125	19	19

Link Out ? help Back to Top
Phytozome	Brast10G006600.1.p