PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G011700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family YABBY
Protein Properties Length: 208aa    MW: 22613.7 Da    PI: 9.1507
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G011700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY225.81.2e-6981795170
               YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes.....hldeslkeelleelkveeenlksnvekee 90 
                           +eqvCyv+CnfCnt+lavsvP +s++++vtvrCGhCt+llsvnl+  ++  a+       hl+ ++ +++++  +  +++ +   ++++
  Brast10G011700.1.p   8 APAEQVCYVHCNFCNTVLAVSVPGNSMLSIVTVRCGHCTNLLSVNLRGLMHSSAVLPaaqdhHLQANVSKQQVHGVNGFHDHPEFGSSSSS 98 
                         5789*****************************************9988765554440001134444433333333322333333333444 PP

               YABBY  91 sastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         s+ ++ +  ++  + ++++ + +    rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ih gl
  Brast10G011700.1.p  99 SPLSKFRLPMVMFSPQNDLLQEHTlHSRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHCGL 179
                         444444444444444555544444369***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.7E-719179IPR006780YABBY protein
SuperFamilySSF470953.14E-8124173IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.3E-5126173IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSSAAQIAPA EQVCYVHCNF CNTVLAVSVP GNSMLSIVTV RCGHCTNLLS VNLRGLMHSS  60
AVLPAAQDHH LQANVSKQQV HGVNGFHDHP EFGSSSSSSP LSKFRLPMVM FSPQNDLLQE  120
HTLHSRPPEK RQRVPSAYNR FIKEEIRRIK ANNPDISHRE AFSTAAKNWA HYPNIHCGLS  180
SGREGGKKLA AEEAAAPAPK KIQGFCS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G011700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577246.11e-132protein YABBY 6 isoform X1
SwissprotQ2QM171e-91YAB6_ORYSJ; Protein YABBY 6
TrEMBLI1IGA31e-131I1IGA3_BRADI; Uncharacterized protein
STRINGBRADI4G01300.11e-131(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.28e-55YABBY family protein