PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G014100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 317aa    MW: 33146.6 Da    PI: 7.3836
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G014100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1073e-33421701115
                 TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaess 78 
                         aag+kdrhsk+ T++g+RdRR+Rls+++a++f+d+qd+LG+d++sk+ieWL+ +a +ai++l+++                 +  + a++ 
  Brast10G014100.1.p  42 AAGGKDRHSKVVTSRGLRDRRIRLSVPTAIQFYDIQDRLGLDQPSKAIEWLIGAASTAIDALPSLdcsfalpapapapA---SPPAAADDA 129
                         6899*****************************************************************9998774432...222244444 PP

                 TCP  79 sssasnsssg..........kaaksaakskksqksaasalnlakesr 115
                         ++s+s+ s+g          +      ++ ++ ++a++a n ++ ++
  Brast10G014100.1.p 130 EVSTSETSKGsvlslangpsD------NNGSAAHQANNAYNGSAAHQ 170
                         444444444434443222220......22222222222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-3244169IPR005333Transcription factor, TCP
PROSITE profilePS5136930.81145103IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEEVGKENSN SSCKRLRGAA GGSGGDSSAA AAWRTSRVAR AAAGGKDRHS KVVTSRGLRD  60
RRIRLSVPTA IQFYDIQDRL GLDQPSKAIE WLIGAASTAI DALPSLDCSF ALPAPAPAPA  120
SPPAAADDAE VSTSETSKGS VLSLANGPSD NNGSAAHQAN NAYNGSAAHQ ASAYNGGSAN  180
GVLAELLHCS SAADKAMQQH VQQPTLAYYA AQSSHVSPMS FEMMPQVTFS QEQQHQRHHA  240
AVAFDRSTLQ SNAVAAPLWP PSQHPFLMQR FSDAPAEASS MHSFFLGGGG SSAAPVAPNV  300
GERRLQLWDF KEERKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-2250104155Putative transcription factor PCF6
5zkt_B6e-2250104155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G014100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237011.10.0transcription factor PCF8
SwissprotA2ZMR93e-87PCF8_ORYSI; Transcription factor PCF8
TrEMBLI1IGD80.0I1IGD8_BRADI; Uncharacterized protein
STRINGBRADI4G01547.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-32TCP family protein