PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G016100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 889aa    MW: 98420 Da    PI: 6.1893
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G016100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.5e-23122222198
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  Brast10G016100.1.p 122 FCKTLTASDTSTHGGFSVPRRSAEKVfppldfSLQPPCQ-ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI-- 209
                         99******************************9999996.9************************************************.. PP

                         SSSEE..EEEEE- CS
                  B3  86 grsefelvvkvfr 98 
                         ++++ +l+++++ 
  Brast10G016100.1.p 210 WNDNNQLLLGIRH 222
                         6767777888875 PP
2Auxin_resp116.52.3e-38248331183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+t+s F+++YnPr+s+seFv++++k++k+++ ++vsvGmRf+m fete+ss rr++Gtv+++sdld+vrWpnS+Wrs+k
  Brast10G016100.1.p 248 AAHAAATNSRFTIFYNPRSSPSEFVIPLAKYVKSVYhTRVSVGMRFRMLFETEESSVRRYMGTVTAISDLDSVRWPNSHWRSVK 331
                         79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.66E-47109251IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-40113237IPR015300DNA-binding pseudobarrel domain
CDDcd100176.65E-22121214No hitNo description
PfamPF023622.4E-21122222IPR003340B3 DNA binding domain
SMARTSM010192.9E-23122224IPR003340B3 DNA binding domain
PROSITE profilePS5086312.111122224IPR003340B3 DNA binding domain
PfamPF065074.0E-33248331IPR010525Auxin response factor
PfamPF023092.7E-8752840IPR033389AUX/IAA domain
SuperFamilySSF542771.67E-6754830No hitNo description
PROSITE profilePS5174523.91755839IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
MTQTLPENDG EQRCLNSELW HACAGPLVSL PVVGSRVIYF PQGHSEQVAA STNKEVDAQI  60
PNYPNLPPQL ICQLHNVTMH ADVETDEVYA QMTLQPLSPE EQKEPFLPIE LGAASKQPTN  120
YFCKTLTASD TSTHGGFSVP RRSAEKVFPP LDFSLQPPCQ ELIARDLHDN EWKFRHIFRG  180
QPKRHLLTTG WSVFVSAKRL VAGDSVIFIW NDNNQLLLGI RHANRPQAIM PSSVLSSDSM  240
HIGLLAAAAH AAATNSRFTI FYNPRSSPSE FVIPLAKYVK SVYHTRVSVG MRFRMLFETE  300
ESSVRRYMGT VTAISDLDSV RWPNSHWRSV KVGWDESTAG EKQPRVSLWE IEPLTTFPMY  360
PTAFPLRLKR PWASGLPSMH GMFNGVKNDD FARYSSLMWL GNGDRGTQSS NFQGLGVSPW  420
LQPRIESPLL GLKPDTYQQM AAAALEEIRA GDPLIQSSAL LQFQQTQNLN GGLDSPYANH  480
VLQQMQYQSH QSSLPTVQEG YNQYSGNSGF LQSHLQQLQL HNPQQLQKQQ ELPSLQQQRH  540
QILQQQSHQE MQQQLSSSCH RVSDVDSSMP GSESASHSQS PFYQQNLLEG NNDPSLHMHN  600
SFRDFSSQEA SNLVSLPQSS QLMAPEGWPS KRLAVEPLAH IESRSGQPKL ENGNHQDSIS  660
HFAGTLASQS ARVSSVQACG SNVDNQLLSS SHHDGMSSVR SGSGNGTVSM AIPLFRYGGE  720
DLPPANSLAT SSCLGESATF NSLDNICGVN PSQGGTFVKV YKSGSPGRSL DITKFSSYYE  780
LRSELEHLFG LEGQLEDPVR SGWQLVFVDR ENDILLVGDD PWQEFVNSVW CIKILSPQDV  840
HQMVRNGEGL LSAPGARMMQ GNVCDDYSAS HDLQNLTGNI ASVPPLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1581535251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G016100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3688220.0AK368822.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2080I14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237021.10.0auxin response factor 25
SwissprotQ2QM840.0ARFY_ORYSJ; Auxin response factor 25
TrEMBLA0A0Q3IHY20.0A0A0Q3IHY2_BRADI; Auxin response factor
STRINGBRADI4G01730.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127122934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S, et al.
    CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.
    Plant Physiol., 2014. 165(3): p. 1035-1046
    [PMID:24808099]