PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G017100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YA
Protein Properties Length: 214aa    MW: 23257.6 Da    PI: 7.4301
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G017100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.73.4e-32107163158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep+YVNaKQ+++Il+RRq+Rak+e+e+kl +k+rkpylheSRh+hAl+R+Rg gGrF
  Brast10G017100.1.p 107 EEPVYVNAKQFNAILRRRQSRAKAESERKL-IKGRKPYLHESRHQHALKRARGAGGRF 163
                         69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.8E-35105166IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.34106166IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.3E-27108163IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.0E-23109131IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860111131IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.0E-23140163IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MTSVADGISG DHRADEQQQQ QQQTQAGHED QQEATTTSIG SQTMVVPPST DYVMPYAHQE  60
VCHAMGQIAY PSIDPYYYGA YGGQPMMHPP LVGMHPAGLP LPTEAIEEPV YVNAKQFNAI  120
LRRRQSRAKA ESERKLIKGR KPYLHESRHQ HALKRARGAG GRFLNAKSDD NEEHSDSSSK  180
DKQNGVAPHS SGQPSTSPSS KGASPANQTG NRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-21106179174NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G017100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237027.11e-142nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_010237028.11e-142nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_024319080.11e-142nuclear transcription factor Y subunit A-7 isoform X1
TrEMBLI1IGH11e-141I1IGH1_BRADI; Uncharacterized protein
STRINGBRADI4G01820.11e-141(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65553853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.11e-38nuclear factor Y, subunit A7