PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G025900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 156aa    MW: 17166.9 Da    PI: 10.0386
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G025900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.33.6e-152421055
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        +rRRd+iN+++ +L++l+P++     +K +Ka++Le++++YIksLq
  Brast10G025900.1.p  2 QRRRDKINDKMRTLQQLMPNC-----TKTDKASTLEEVIQYIKSLQ 42
                        8********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.739141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-12242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-14244No hitNo description
SMARTSM003531.6E-10247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-16257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MQRRRDKIND KMRTLQQLMP NCTKTDKAST LEEVIQYIKS LQHQMQVLSN GYGLPAAILP  60
PSGMVPTTCM QPVGDTFGGQ VAPVALSQYP FAPMTMLARP QYSNSVPLAL PSTVLYRHQI  120
GSVNAAQQLA RRRHLVSPSD LVVPTSHMGE WTHTP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G025900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318881.18e-58transcription factor ALC-like
TrEMBLA0A0Q3GYM33e-58A0A0Q3GYM3_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5024822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.26e-21phytochrome interacting factor 3