PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G026000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 229aa    MW: 25537 Da    PI: 6.6448
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G026000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.1e-111411811055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +rRR ++ ++f +L++l+P +     +K + a++L ++++Y+ksLq
  Brast10G026000.1.p 141 KRRRCKVTERFKTLQQLVPGC-----QKCNQASTLDQTIKYMKSLQ 181
                         9*******************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.497131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-10137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-13138199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.20E-11140185No hitNo description
PfamPF000109.5E-9141181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-12141187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSVTGSGYSG GCFAQLAEAA ATGAGAGDDD FLDTCYHSTY DNGGDDLFEL AMEELQRRPL  60
SPVPVVAAEM LYAVPPSEEE MAAWLYPIVR GEELQVDNNG HVRGQNMVVG DHQALSSKEE  120
PKKSKYTADQ KLPETEKNCA KRRRCKVTER FKTLQQLVPG CQKCNQASTL DQTIKYMKSL  180
QQQLEYSMAS IVGCSMRPAY MQPPGCYQPR FQMGHRRPCY FHWLTIRC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G026000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368QN001e-29A0A368QN00_SETIT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-13phytochrome interacting factor 3