PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G034400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 415aa    MW: 44424.1 Da    PI: 4.3959
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G034400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-1966115255
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Brast10G034400.1.p  66 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 115
                         789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.69E-2965122No hitNo description
Gene3DG3DSA:3.30.730.103.0E-2766122IPR001471AP2/ERF domain
PROSITE profilePS5103219.55966123IPR001471AP2/ERF domain
PfamPF008471.0E-1366115IPR001471AP2/ERF domain
SMARTSM003804.6E-3566129IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-1966123IPR016177DNA-binding domain
PRINTSPR003676.1E-86778IPR001471AP2/ERF domain
PRINTSPR003676.1E-889105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MLPSSMARKR KASSDADIDV AAATSNNNNK SPPLLPLPLV PPPPPSSTAD AWMTTSSARQ  60
QRGRKRFVGV RQRPSGRWVA EIKDTIQKIR VWLGTFDTAE EAARAYDEAA CLLRGANTRT  120
NFWPRPSPPP MAAAVQLQLQ PAPAAMAPAP ALPSKVSNLL LLRLKARNNQ QQQQQILLEQ  180
QQKQEAHHYG HGGRDEEYGG FHVDDFLSDA CNNDNGSPEM EEEEDEEEEE GEEEELDFQF  240
MDAPSLSTAA AGSDLCSPFE MLGGAVLPVE AAGHGHGDGE GYGGEPASAV QEAMRRMDYE  300
RKISASLYAL SGVPECLRMR LGTGAGIAAA REQLSGLREA CRKKQQLAVQ EPAPAADDAA  360
EDEGKASGQE EYSGSSSSNS APEAASSSSS TEENGDGDVL LWSSLDLAPI CFMT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-13661351481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G034400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126204e-83CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579238.21e-170uncharacterized protein LOC100826710
RefseqXP_024311046.11e-170uncharacterized protein LOC100826710
TrEMBLA0A0Q3IIS61e-169A0A0Q3IIS6_BRADI; Uncharacterized protein
STRINGTraes_5DS_1BDB9837E.11e-129(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-21related to AP2 11