PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast10G036500.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 224aa MW: 25017.5 Da PI: 6.3595

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast10G036500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	45.4	2.5e-14	61	183	9	128
NAM 9 PtdeelvveyLkkkvegkkleleevikevdiykv....ePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 Ptd elv ++L++ ++ ++ e + +vd+++v +P +Lp + k+++ +y+F g + n t +gyW + +++ + Brast10G036500.1.p 61 PTDVELVENHLRPAFQRLPVAKEIIRGRVDVNTVlpfmNPFKLPgVEGKEGRIGMYYFQLG-----FGYKDNLETPDGYWAKRDWGRAIEV 146 9****************888454556688775333488999933444444488999875.....45678899***9988888877 PP NAM 95 k.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ +g+kkt+ f+k +k +kt+W+m+ y+l Brast10G036500.1.p 147 TkgdrgGTDIIGIKKTFDFHKY--KKDTKTKWTMNIYSL 183 7456555555******54..5556*****9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	20.263	53	201	IPR003441	NAC domain
SuperFamily	SSF101941	1.11E-18	60	201	IPR003441	NAC domain
Pfam	PF02365	3.7E-10	61	183	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MSIDLPPSSV VEESQARPGG DFVSSHLSLV PPPLPAQTDL PALTVEQELQ AWELPDLPSI 60 PTDVELVENH LRPAFQRLPV AKEIIRGRVD VNTVLPFMNP FKLPGVEGKE GRIGMYYFQL 120 GFGYKDNLET PDGYWAKRDW GRAIEVTKGD RGGTDIIGIK KTFDFHKYKK DTKTKWTMNI 180 YSLVSSARVQ DLLVLCHVFE QDSAGYDSRP KCPTFHQGKC NGN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast10G036500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003578557.1	1e-62	uncharacterized protein LOC100842183 isoform X1
Refseq	XP_024310914.1	1e-62	formin-like protein 6 isoform X2
TrEMBL	A0A0Q3HDB1	5e-61	A0A0Q3HDB1_BRADI; Uncharacterized protein
STRING	BRADI4G03620.1	4e-62	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18590	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39610.1	2e-11	NAC domain containing protein 6

Link Out ? help Back to Top
Phytozome	Brast10G036500.1.p