PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G051600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 252aa    MW: 28444.6 Da    PI: 6.2796
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G051600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.8e-171158148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT +Ed+ lv++++++G g+W+  ar  g++Rt+k+c++rw++yl
  Brast10G051600.1.p 11 RGPWTVDEDLTLVNYIAEHGEGRWNCLARGAGLKRTGKSCRLRWLNYL 58
                        89********************************************97 PP
2Myb_DNA-binding57.72.8e-1864107146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg++T+eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  Brast10G051600.1.p  64 RGNFTAEEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 107
                         89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.471658IPR017930Myb domain
SuperFamilySSF466891.76E-309105IPR009057Homeodomain-like
SMARTSM007174.2E-131060IPR001005SANT/Myb domain
PfamPF002492.1E-151158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-221265IPR009057Homeodomain-like
CDDcd001678.29E-101358No hitNo description
PROSITE profilePS5129424.45159113IPR017930Myb domain
SMARTSM007173.3E-1663111IPR001005SANT/Myb domain
PfamPF002491.1E-1664107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-2566112IPR009057Homeodomain-like
CDDcd001675.68E-1266107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAEADAAEVR RGPWTVDEDL TLVNYIAEHG EGRWNCLARG AGLKRTGKSC RLRWLNYLRP  60
DVKRGNFTAE EQLLILDLHS RWGNRWSKIA QHLPGRTDNE IKNYWRTRVQ KHAKQLNCDA  120
NSSKFKDAMR YLWMPRLADH HHLHHQASDH AAMPSGQQPI GGYMESSVGM ATSSSGSFAS  180
ESYDGGFYAN ACVGETMLND DGNCWIQEAG FCAEAAKDCQ FQDHELSGWV QGFSEGLAED  240
FWSLDDVWKM Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2581111103MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-25711123126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G051600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0090181e-120BT009018.1 Triticum aestivum clone wdk3c.pk006.n12:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579302.11e-174transcription factor JAMYB
SwissprotQ2QZJ81e-106JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLI1IHH61e-173I1IHH6_BRADI; Uncharacterized protein
STRINGBRADI4G04627.11e-173(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.11e-75myb domain protein 112
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]