PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G073000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 196aa    MW: 22190.9 Da    PI: 7.6011
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G073000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.1e-101221611054
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++RR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k +
  Brast10G073000.1.p 122 KKRRQRINERLRTLQKLIPNG-----TKVDISTMLEEAVQYVKFM 161
                         9******************97.....8***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-12109172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-13110176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.015112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-9118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.01E-8121166No hitNo description
PfamPF000105.3E-8122161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MPHQRIQRSA EMEAAECASY WSSLDAISEE SEMLLHLQSL LRCSSDSDTS FFSSNNESAN  60
ASFDHQVDNL SSPDERNIGI KRKFQVDQER DHDNEVRAAP SAPRKNGKKS RAAKDSQSHY  120
AKKRRQRINE RLRTLQKLIP NGTKVDISTM LEEAVQYVKF MHLQIKILSS DEMWMYAPLA  180
CEAPASGISI TRMTI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G073000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575488.11e-110transcription factor bHLH84
TrEMBLI1II471e-109I1II47_BRADI; Uncharacterized protein
STRINGBRADI4G06567.11e-110(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145082123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.12e-35root hair defective 6-like 4