PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G074900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 501aa    MW: 53368.5 Da    PI: 8.1564
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G074900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.11.4e-31229285259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  Brast10G074900.1.p 229 DDGYNWRKYGQKVVKGSDCPRSYYKCTHPSCPVKKKVEHAE-DGQISEIIYKGKHNHQ 285
                         8**************************************99.***************8 PP
2WRKY1084.7e-34385443159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe
  Brast10G074900.1.p 385 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFAGCNVRKHIERASSDPKAVITTYEGKHNHE 443
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-28225287IPR003657WRKY domain
SuperFamilySSF1182905.1E-25227287IPR003657WRKY domain
SMARTSM007741.1E-33228286IPR003657WRKY domain
PfamPF031062.8E-24229285IPR003657WRKY domain
PROSITE profilePS5081123.192229287IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-37371445IPR003657WRKY domain
SuperFamilySSF1182902.88E-29377445IPR003657WRKY domain
PROSITE profilePS5081137.413380445IPR003657WRKY domain
SMARTSM007747.0E-40385444IPR003657WRKY domain
PfamPF031064.1E-26386443IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MSSRPPPPPR PHLSLPPRST AESLFTGVGD ASPGPLTLAS ALFSSDSDAD AGGGGGGGSA  60
SSGAGPTSFT QLLIGNLSQP PQQQQQQQQQ QERGRGGVAR AGPAISVAPP AGAAVFTVPP  120
GLSPSGLFDS PGLLFSPAMG GFGMSHQQAL AQVTAQASHS PLRMFDHIEQ PSFSAAASSS  180
EAVQHMSSAA NMAGMSEMAT ISNNDNAAFH SAEASQRYQV PAPVDKPADD GYNWRKYGQK  240
VVKGSDCPRS YYKCTHPSCP VKKKVEHAED GQISEIIYKG KHNHQRPPNK RAKDGNSSAA  300
EHNEQSNDTA SGLSGVRRDQ EAVYAMSEQL SGLSDGDDKD DGESRPNEVD NGENDCKRRN  360
IQVSSQKTLT ESKIIVQTTS EVDLLDDGYR WRKYGQKVVK GNPHPRSYYK CTFAGCNVRK  420
HIERASSDPK AVITTYEGKH NHEPPVGRGS NQNTGNSAPS NRSQQRGPSS MSSNQTSLTR  480
TDFSNNNQRP IGVLQFKREE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-39229445877Probable WRKY transcription factor 4
2lex_A8e-39229445877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G074900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2168400.0JX216840.1 Hordeum vulgare WRKY61 protein (WRKY61) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576063.10.0probable WRKY transcription factor 3
SwissprotQ9XI901e-124WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLI1II620.0I1II62_BRADI; Uncharacterized protein
STRINGBRADI4G06690.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-112WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]