PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G077200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 24709.1 Da    PI: 8.2122
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G077200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.79.9e-261058250
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        rienk  rqvtfskRr g+lKKA E+SvLCda+va i+fs +g+ly+ s
  Brast10G077200.1.p 10 RIENKVSRQVTFSKRRSGLLKKAREISVLCDADVAAIVFSANGNLYTCS 58
                        8*********************************************966 PP
2K-box56.99.3e-20901721698
               K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                         s++ ++  L++++e L+++ R+l+Ge+L+sL+ +  qqLeqq+  +l++iR +++ ll ++i+el++ke+ l e+nk L+++ 
  Brast10G077200.1.p  90 SMNSDHILLRSQVEALRKSERNLMGEQLGSLTQRGVQQLEQQIGAALRSIRLRRDFLLANSIRELRNKERLLMEQNKILEREK 172
                         67788889***********************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.212161IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-35160IPR002100Transcription factor, MADS-box
CDDcd002652.82E-35273No hitNo description
SuperFamilySSF554554.45E-29275IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-25323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-241056IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.27988179IPR002487Transcription factor, K-box
PfamPF014869.6E-1790171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGRGKVHLRR IENKVSRQVT FSKRRSGLLK KAREISVLCD ADVAAIVFSA NGNLYTCSTQ  60
SSMDKILERY QRCLLPEGGV IEEYSELEGS MNSDHILLRS QVEALRKSER NLMGEQLGSL  120
TQRGVQQLEQ QIGAALRSIR LRRDFLLANS IRELRNKERL LMEQNKILER EKAELLQASM  180
HKNCTSAFCN TAAASLPNLN ISIEDGDSDD EPAGSATVSV D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-171109192MEF2C
5f28_B5e-171109192MEF2C
5f28_C5e-171109192MEF2C
5f28_D5e-171109192MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G077200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693260.0KF469326.1 Brachypodium distachyon MADS-box transcription factor 31 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288315.11e-147MADS-box transcription factor 20-like
SwissprotQ2QQA31e-69MAD20_ORYSJ; MADS-box transcription factor 20
TrEMBLI1II851e-145I1II85_BRADI; MADS-box transcription factor 31
STRINGBRADI4G06867.11e-146(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146432121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-52MIKC_MADS family protein