PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G085400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 250aa    MW: 27263.9 Da    PI: 9.6406
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G085400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.51.4e-45161481128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         lppGfrF+Ptdeelvv+yL++++ +++l+++  i++v+++ ++P+dL p     +e+e yfF+++++ky +g r+nrat +gyWkatgk+k
  Brast10G085400.1.p  16 LPPGFRFRPTDEELVVHYLRRRALSSPLPAAVDIPDVRLLAHDPSDLlP--PGWSEEERYFFTCKESKYVKGCRANRATGAGYWKATGKEK 104
                         79***************************9666**************43..34478999******************************** PP

                 NAM  91 evlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +v ++         +vg+k++Lvfy+g+ap+g+ktdWvmheyrl
  Brast10G085400.1.p 105 PVAVSvpaakgAAVVVGMKRSLVFYRGKAPSGNKTDWVMHEYRL 148
                         ***998887665666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-5013178IPR003441NAC domain
PROSITE profilePS5100549.95216178IPR003441NAC domain
PfamPF023651.1E-2617148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
METKESAVAA DASRRLPPGF RFRPTDEELV VHYLRRRALS SPLPAAVDIP DVRLLAHDPS  60
DLLPPGWSEE ERYFFTCKES KYVKGCRANR ATGAGYWKAT GKEKPVAVSV PAAKGAAVVV  120
GMKRSLVFYR GKAPSGNKTD WVMHEYRLAG AGLSPCRRAQ AAAANPEEGW VLCRVFRKKK  180
GAAAAAAADT GDIQDPVEED QSVRFIDFFA RAEDARRRPR AASPLSSSCV TDASAEHCRE  240
LQETTSRGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-40101809170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G085400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0919151e-152FP091915.1 Phyllostachys edulis cDNA clone: bphyem115l12, full insert sequence.
GenBankFP0991851e-152FP099185.1 Phyllostachys edulis cDNA clone: bphyem106m22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575526.11e-149NAC domain-containing protein 83
SwissprotQ9FY936e-54NAC83_ARATH; NAC domain-containing protein 83
TrEMBLI1IIG71e-148I1IIG7_BRADI; Uncharacterized protein
STRINGBRADI4G07527.11e-149(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.17e-51NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]