PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G087800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 384aa    MW: 43307 Da    PI: 7.6944
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G087800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.63.1e-11114193190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fYn  + evGF v+ sk + + + +   +++  C + g++ +++++         ++r+gC a++++  ++d+ w++ + ++ HnH+l+
  Brast10G087800.1.p 114 NFYNLQSWEVGFGVKLSKCRLNMHRK-KCMQEIACGCAGRPMRDNSR---------SSRCGCPAMIRLLGSSDNGWYICEHRSAHNHPLS 193
                         69****************99995555.678899***99998876555.........99******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.9E-8114193IPR004330FAR1 DNA binding domain
PfamPF105512.0E-15315378IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MLNSGPGGEH ITFDMNEPAI VHDPVITSDV NNGTAEHDGV LPSDGTDTKP GLVSPTEGWR  60
KRIRVGNAPD ERRPNPARPC ALEQSVWNFA DRKTGEVIYP AIGTQFDSLD EAYNFYNLQS  120
WEVGFGVKLS KCRLNMHRKK CMQEIACGCA GRPMRDNSRS SRCGCPAMIR LLGSSDNGWY  180
ICEHRSAHNH PLSTTCGEKL HWPSRRHIDK YTKELVRHLR ENNISLGKVY SIIGSFFGSM  240
ENVPFTKRSL KGLCAEISRD QSDQDAAKTM EAFSAMQDAD PNFKYSVQID DDSRIKTLMW  300
TSGRCMEKYA CFGDVISFDT TYRTNLYDMP FGLFVGVNNH FQSIIFGGVL MRDEKVESFK  360
WVFSEFMRMI GGKNKQSIHQ NHV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G087800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753620.10.0putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_024313565.10.0putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A0Q3ENC30.0A0A0Q3ENC3_BRADI; Uncharacterized protein
STRINGTraes_2DL_01DEC201E.21e-166(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.11e-35FAR1-related sequence 11