PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G093400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 445aa    MW: 47812.6 Da    PI: 8.2355
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G093400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.43.7e-115781327
                        S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                        ++ C++++rtG C++G +CkF+H+p
  Brast10G093400.1.p 57 EPDCSYYMRTGLCRFGMTCKFNHPP 81
                        789********************97 PP
2zf-CCCH38.81.5e-12102126327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C+++++tGtCk+G++CkF+H++
  Brast10G093400.1.p 102 QPECQYYLKTGTCKFGATCKFHHPR 126
                         799********************96 PP
3zf-CCCH314.2e-10148172327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C +++rtG+Ck+ ++CkF+H++
  Brast10G093400.1.p 148 EKECAYYLRTGQCKFASTCKFHHPQ 172
                         679********************97 PP
4zf-CCCH406.5e-13309334227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+f+++tG Ck+G+ CkF+H++
  Brast10G093400.1.p 309 DQPECQFYMKTGDCKFGAVCKFNHPK 334
                         689*********************96 PP
5zf-CCCH36.49e-12356380327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C f++r+G+Ck+G++CkF H++
  Brast10G093400.1.p 356 EPVCTFYSRYGICKFGPNCKFDHPM 380
                         789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.2815482IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-55481IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-85781IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-55982IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-46080IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.44199127IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-699126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6101128IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10102126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5105127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6145173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324145173IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-4145172IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-7148172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455307335IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5307334IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9309334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5310336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4313335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.361353381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-6353379IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6353380IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-9356380IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4358378IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MAAAAAGAGS GGEGSSSPAA LAIGTHHGST EETMWQMTLG GGGESMEPGP YPERIGEPDC  60
SYYMRTGLCR FGMTCKFNHP PNRKLAVAAA RMNGEYPYRV GQPECQYYLK TGTCKFGATC  120
KFHHPREKAA IATRAQLNVL GYPLRPNEKE CAYYLRTGQC KFASTCKFHH PQPSSTMVAV  180
RGSMYSPGQS ATSPGQNTYP GAVTNWNMSR SASFIASPRW PGHSGYAQVI VPQSIVQVPG  240
WNPYAAQIGS SSPDDQQRTP GTTHYYSGSR QSETTGMGDH GMFPPYQAGS VPLGVYAVQG  300
DNVFPERPDQ PECQFYMKTG DCKFGAVCKF NHPKERMIPA PNCALSPLGL PLRAGEPVCT  360
FYSRYGICKF GPNCKFDHPM GTVMYGSVTS PTSDVPTLHY QLAPSPGHSE RLLDGGGSGR  420
SHRVPQSDSQ HIPTGDGSTE REAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G093400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576637.10.0zinc finger CCCH domain-containing protein 66 isoform X2
SwissprotQ2QT650.0C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLI1IIN50.0I1IIN5_BRADI; Uncharacterized protein
STRINGBRADI4G08050.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-144zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]