PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G097900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 197aa    MW: 22472.4 Da    PI: 7.9087
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G097900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.42.9e-2439129290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                          Yn+YAk+ GFsvr + +++ + ++e + r f+Cskeg+r e+    t+++r++ra tr+gCka+l+++++  +g w v++++  HnH+l 
  Brast10G097900.1.p  39 HYNNYAKSKGFSVRLDDKEYINGTKELKGRSFCCSKEGYRLEKYFVaTDQKREPRALTRCGCKAMLEIQRDPgTGLWFVKNFVDVHNHPLD 129
                         6***************************************99876568999*********************9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-2239130IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MSGLSVFEMD GNNPSMEEME EYHMMVSQMF GSDEKGYEHY NNYAKSKGFS VRLDDKEYIN  60
GTKELKGRSF CCSKEGYRLE KYFVATDQKR EPRALTRCGC KAMLEIQRDP GTGLWFVKNF  120
VDVHNHPLDP KQSPFLRSHR RLNNTQKVDA VEYGLGGLRT CQIMEVMEKH HGGYDQVGFV  180
SGTSIISSPS TRRKES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G097900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757448.21e-113protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2CN351e-111A0A2K2CN35_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI2G26340.11e-101(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-19FAR1-related sequence 5