PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G100600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 322aa    MW: 34063.7 Da    PI: 9.3416
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G100600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.8e-181762147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W++eEde l ++v ++G ++W++I++ ++ gR++k+c++rw + 
  Brast10G100600.1.p 17 KGPWSPEEDEALQRLVGRHGARNWSLISKSIP-GRSGKSCRLRWCNQ 62
                        79******************************.***********985 PP
2Myb_DNA-binding54.23.4e-1771113347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++T++Ede +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  Brast10G100600.1.p  71 PFTADEDEAILHAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 113
                         89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.1881267IPR017930Myb domain
SuperFamilySSF466892.25E-3114110IPR009057Homeodomain-like
SMARTSM007174.0E-161665IPR001005SANT/Myb domain
PfamPF002497.3E-181762IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-251870IPR009057Homeodomain-like
CDDcd001671.50E-151961No hitNo description
SMARTSM007171.6E-1468116IPR001005SANT/Myb domain
PROSITE profilePS5129420.37469118IPR017930Myb domain
PfamPF002492.5E-1471113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-2371117IPR009057Homeodomain-like
CDDcd001676.95E-1271114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAAACRGGAS KDVDRIKGPW SPEEDEALQR LVGRHGARNW SLISKSIPGR SGKSCRLRWC  60
NQLSPQVEHR PFTADEDEAI LHAHARFGNK WATIARLLNG RTDNAIKNHW NSTLKRKYSA  120
AASPPSAAGA EEDDVAARPL KRTSSDGHPG LCFSSPGSPS GSDLSDSSHH SLPSVMPSST  180
HVYRPVARAG GVVVLPTAAT PPTQPASPPP APAPATSLSL SLSLPGLDPC QSQAAPVLLP  240
AAPGVQPAQM PFQLQPPPPA PVAMNLAAPR APAPFTGEFL SMMQEMIRIE VRNYMSGFDP  300
RSPADAVHAA NRIMMSMTKI E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-39161173104MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-39161173104C-Myb DNA-Binding Domain
1msf_C5e-39161173104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G100600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3552411e-124AK355241.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1018A13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575562.11e-144transcription factor MYB44
SwissprotO231601e-83MYB73_ARATH; Transcription factor MYB73
TrEMBLI1IIQ51e-143I1IIQ5_BRADI; Uncharacterized protein
STRINGBRADI4G08220.11e-143(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.12e-68myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]