PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G122100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 295aa    MW: 31267.4 Da    PI: 6.9307
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G122100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.55.6e-304107199
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +l+ll+a p++ r+++++sl+yeA+ r+ +P+yG+vg++++++++
  Brast10G122100.1.p   4 SCNGCRVLRKGCSEGCTIRPCLewiksPEAQANATVFLAKFYGRAGLLNLLAAGPDDLRPALFRSLLYEACGRMVNPIYGSVGLLWSGRWE 94 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelallke 99 
                          +q+++e++l +e
  Brast10G122100.1.p  95 ACQAAVEAVLKGE 107
                         ******9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.4263109IPR004883Lateral organ boundaries, LOB
PfamPF031956.3E-244103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEGCT IRPCLEWIKS PEAQANATVF LAKFYGRAGL LNLLAAGPDD  60
LRPALFRSLL YEACGRMVNP IYGSVGLLWS GRWEACQAAV EAVLKGEPVV QVSSDAVPAA  120
QATPPLRAYD IRHVAKGPEA AADPLRVSRA GRTRFKRASS STSKTKKGSA SAGAKSLSPA  180
PRQESEQAPS HEESAGSHNH GHVDDEGMMM AVEQTREDSD QDTEAEAGSH VSQAEQSRPV  240
PPMRQLVHEE IGLELTLGLE PVVTRVARSP LAQLDLSGLS AESSHIGLGL ALPA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G122100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0954391e-142FP095439.1 Phyllostachys edulis cDNA clone: bphylf039l14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310953.10.0LOB domain-containing protein 42-like
SwissprotQ9M8862e-79LBD41_ARATH; LOB domain-containing protein 41
TrEMBLI1IL920.0I1IL92_BRADI; Uncharacterized protein
STRINGBRADI4G16740.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.15e-70LOB domain-containing protein 41