PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast10G125600.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRF

Protein Properties

Length: 334aa MW: 35634.7 Da PI: 8.8921

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast10G125600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	70	2.9e-22	139	181	3	45
WRC 3 epgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr+ ++++k+CErH++rgr+rsrk++e Brast10G125600.1.p 139 EPGRCRRTDGKKWRCSRDSVGDQKYCERHINRGRQRSRKHVEG 181 9***************************************996 PP
2	QLQ	61.8	1.9e-21	84	120	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK++aan+PvP+ Ll++i++ Brast10G125600.1.p 84 GPFTPTQWMELEHQALIYKHIAANAPVPSSLLLPIKR 120 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.8E-13	84	120	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.754	85	120	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	7.7E-16	85	118	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.23	137	181	IPR014977	WRC domain
Pfam	PF08879	2.1E-19	139	180	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MLSSCGGGGH PNSPQKHGRC DEQGGQDGFL GLAGASLPPP PSCSFLGSTG SSGAQMLSFS 60 SNDAAGFGLT SGASMQGVLA RVRGPFTPTQ WMELEHQALI YKHIAANAPV PSSLLLPIKR 120 SLNPWVGWGP FRPGGADIEP GRCRRTDGKK WRCSRDSVGD QKYCERHINR GRQRSRKHVE 180 GRKVTPTIAE PAMVVSGGVS SRSHAAWQQQ VEGLAANVAV PFPGQSNREL LEKQNVVEQS 240 SVPTPMDPFD FPSSHSSSSR DEVAFSPLKL HHDLGQAFSV YGAGSSSEKG NRSQPQESWS 300 PVTRETLDDG PLGEVFRSKS CQSPYGASQQ TKN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast10G125600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003577464.1	0.0	growth-regulating factor 8 isoform X1
Swissprot	Q6AWY1	1e-133	GRF8_ORYSJ; Growth-regulating factor 8
TrEMBL	A0A0Q3HIP1	0.0	A0A0Q3HIP1_BRADI; Uncharacterized protein
STRING	BRADI4G16450.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12960	27	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	7e-46	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Brast10G125600.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]