PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G127600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 297aa    MW: 32173.1 Da    PI: 6.6129
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G127600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.8e-181663148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd  lv +++q+G+g+W++++++ g+ R+ k+c++rw +yl
  Brast10G127600.1.p 16 KGPWTPEEDIVLVSYIQQHGPGNWRSVPEHTGLMRCSKSCRLRWTNYL 63
                        79********************************************97 PP
2Myb_DNA-binding47.34.6e-1569114148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T+ E+ +++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Brast10G127600.1.p  69 RGNFTPHEEGIIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 114
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.8041167IPR017930Myb domain
SuperFamilySSF466891.47E-3013110IPR009057Homeodomain-like
SMARTSM007171.5E-131565IPR001005SANT/Myb domain
PfamPF002492.7E-161663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-241770IPR009057Homeodomain-like
CDDcd001672.55E-121863No hitNo description
PROSITE profilePS5129419.14868118IPR017930Myb domain
SMARTSM007172.4E-1368116IPR001005SANT/Myb domain
PfamPF002492.5E-1369114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2471118IPR009057Homeodomain-like
CDDcd001675.34E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGRPPCCDNG GAGVKKGPWT PEEDIVLVSY IQQHGPGNWR SVPEHTGLMR CSKSCRLRWT  60
NYLRPGIKRG NFTPHEEGII IHLQALLGNK WAAIASYLPQ RTDNDIKNYW NTHLKKKVKR  120
LQQQTTHPAD HSFQQQTTPA PNAASATTSS NYYNPISSSS TSSNLDAATQ AMAYPDTTTC  180
SSAPGSEAAT IGAVSKLFQT WMAKAPLPAV VQDYKAMVAM QEFQEDQEAR CDAGFVISGD  240
RSSSEMVTSR GEADQSAAAT FSLLENWLLD DMAPGQASMD GLMDMSAGCC AGPIMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G127600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9555501e-136EU955550.1 Zea mays clone 1536772 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577454.10.0transcription factor MYB30
SwissprotB3VTV72e-83MYB60_VITVI; Transcription factor MYB60
TrEMBLI1IL280.0I1IL28_BRADI; Uncharacterized protein
STRINGBRADI4G16290.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.15e-80myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]