PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G130700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 255aa    MW: 27931.6 Da    PI: 6.7491
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G130700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.84.8e-16195231135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C+nCg  +  Tp +Rrgpdg+++LCnaCGl++ k+g+
  Brast10G130700.1.p 195 CTNCGERSdaTPKMRRGPDGSRSLCNACGLMWDKNGR 231
                         **********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132011.55572107IPR010399Tify domain
PfamPF062003.8E-677105IPR010399Tify domain
PfamPF062037.7E-8136178IPR010402CCT domain
SMARTSM004016.6E-6189238IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.011189246IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.76E-9190235No hitNo description
Gene3DG3DSA:3.30.50.108.6E-14194234IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.68E-14195247No hitNo description
PROSITE patternPS003440195222IPR000679Zinc finger, GATA-type
PfamPF003201.4E-13195231IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MQQQQPSPPI RATAGANDED PLALDLEFDV VLPDPDDDLF AFTLGFGQAF TEDQAAAAAP  60
MQQQEMVQPA DAQVGEEQLV VGYDGRMFVF DSVQPHKVET ILSLLDGHEL VPPSQSTKPQ  120
LTYLVQPVVV PRDFDRPAAL SRYRAKRQRK GLEPVVKADY SCRRDVALRM RRRGGRFVAL  180
STKSTGDSPH ELTLCTNCGE RSDATPKMRR GPDGSRSLCN ACGLMWDKNG RLRETAGNPR  240
PCGGGRWCGR SGTM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G130700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311007.11e-111GATA transcription factor 20-like
TrEMBLI1IKY11e-147I1IKY1_BRADI; Uncharacterized protein
STRINGBRADI4G15720.11e-147(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158801213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.23e-30ZIM-LIKE 2