PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G162400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 246aa    MW: 26588 Da    PI: 7.807
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G162400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86.2e-111682081055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Brast10G162400.1.p 168 KKRRERINEKLRVLQQLIPNG-----TKVDISTMLEEAVQYVKFLQ 208
                         9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-14157222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.805158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-13158221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-11164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.69E-12167212No hitNo description
PfamPF000103.6E-8168208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEAKCAAIWS SVDARSEESE MIAHLQSMFW SSSDVAVNLC SSNTSGSACV TASTVPSSVF  60
LPLGNDESYG AAPLHQAITG HKRISHMDEQ MKKTRKKSRR VPSVSKALGS SLVDNQTNAD  120
IVNQSSSSCC SSGEDSIGTS EKSIVPNQSD NTSGCKRPSK NMQSLYAKKR RERINEKLRV  180
LQQLIPNGTK VDISTMLEEA VQYVKFLQLQ IKVLSSDETW MYAPLAYNGM DIGLALALGT  240
AANQE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19199KKTRKKSRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G162400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575800.11e-162transcription factor bHLH139 isoform X1
TrEMBLI1IK271e-160I1IK27_BRADI; Uncharacterized protein
STRINGBRADI4G12615.11e-161(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140022528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-43bHLH family protein