PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G196100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 157aa    MW: 17099.8 Da    PI: 11.2113
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G196100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000465375123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C  Cg++F++   L  H  +H
  Brast10G196100.1.p 53 YECRSCGRRFRTFQALGGHRTSH 75
                        99**********99998888877 PP
2zf-C2H215.26.2e-0597119123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ Cg +F +   L  H+r+H
  Brast10G196100.1.p  97 HRCGTCGLVFATGQALGGHMRRH 119
                         79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.1E-95276IPR007087Zinc finger, C2H2
SuperFamilySSF576671.89E-753119No hitNo description
SMARTSM003550.465375IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.0095380IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
SMARTSM003550.1397119IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-897119IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.32597124IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MDGVVVVSGR SRLLQRLLAA LSSSSPAPVI CKKKKKSSCS KLVLHLELED GAYECRSCGR  60
RFRTFQALGG HRTSHNRRPP PAGSRKLGKA ERSLLEHRCG TCGLVFATGQ ALGGHMRRHF  120
KRPPANIMAA AAWSSGSGGR EEEDDHAWKP RLIQFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G196100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238980.12e-49zinc finger protein ZAT11
TrEMBLI1IJ534e-48I1IJ53_BRADI; Uncharacterized protein
STRINGBRADI4G09410.17e-49(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.16e-18C2H2 family protein