PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv1_000240_ccns.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

C2H2

Protein Properties

Length: 441aa MW: 49330.3 Da PI: 9.8092

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv1_000240_ccns.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	211	233	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C++ F ++nL+ H+ + H Bv1_000240_ccns.t1 211 SCPHCSEIFMKPENLELHQAVrH 233 8******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	210	233	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.06E-23	235	440	No hit	No description
Gene3D	G3DSA:3.90.228.10	8.4E-15	236	439	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MAKTTNPRKP TKEIHRTRKS QPPQRREKEK EQQQQLPSWV VMRNILTCKH LEVEQQPQPQ 60 LQEQQATLTQ KKKQQKLGAK SAIMEENNKK NKKMRCSGSL CNNTKVMQRP EPVSPETLQR 120 KNRGLPGSST SSSSHEGSNR SIRSPVLSEL SNNNNNTNNL LTKSSSSNSN ANYSIKGMPF 180 RRLSGCYECR MVVDPVLAFT RDPSLRATIC SCPHCSEIFM KPENLELHQA VRHAVSELGP 240 EDTSKNIVEI IFQSSWLKKQ TPVCQIDRIL KVHNTQKTIN KFEEYRDSIK FKATRLPKKH 300 ARCIADGNEL LRFHCSSFMC SLGLDGSSNL CNSIPNCNVC SIIKNGFKLA DEGPAGKGIL 360 TTATSGRAHD QADVGVEEHD RRAMLVCRVI AGRVKKSPEG GGAEEYDSVA GATGVYSNLD 420 ELYVFNPKAI LPCFVVIYRG F

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MAKTTNPRKP TKEIHRTRKS QPPQRREKEK EQQQQLPSWV VMRNILTCKH LEVEQQPQPQ  60
LQEQQATLTQ KKKQQKLGAK SAIMEENNKK NKKMRCSGSL CNNTKVMQRP EPVSPETLQR  120
KNRGLPGSST SSSSHEGSNR SIRSPVLSEL SNNNNNTNNL LTKSSSSNSN ANYSIKGMPF  180
RRLSGCYECR MVVDPVLAFT RDPSLRATIC SCPHCSEIFM KPENLELHQA VRHAVSELGP  240
EDTSKNIVEI IFQSSWLKKQ TPVCQIDRIL KVHNTQKTIN KFEEYRDSIK FKATRLPKKH  300
ARCIADGNEL LRFHCSSFMC SLGLDGSSNL CNSIPNCNVC SIIKNGFKLA DEGPAGKGIL  360
TTATSGRAHD QADVGVEEHD RRAMLVCRVI AGRVKKSPEG GGAEEYDSVA GATGVYSNLD  420
ELYVFNPKAI LPCFVVIYRG F

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010692561.1	0.0	PREDICTED: uncharacterized protein LOC104905404
TrEMBL	A0A0K9QQH8	0.0	A0A0K9QQH8_SPIOL; Uncharacterized protein
STRING	XP_010692561.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	2e-99	C2H2-like zinc finger protein