PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_000500_ghtj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ARF
Protein Properties Length: 577aa    MW: 64060.5 Da    PI: 6.3996
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_000500_ghtj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.33.4e-24121223199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f kvltpsd+++ g +++p+ +a+++         ++ +  ++t++d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD+vvF +
  Bv1_000500_ghtj.t1 121 FAKVLTPSDANNGGGFSVPRFCADKIfppldftADPPVQ--KITITDMHGEGWDFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGDSVVFIM 209
                         89*********************999*****97666666..79999********************************************7 PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                         d+ s++ l+v+++r+
  Bv1_000500_ghtj.t1 210 DE-SNGGLFVGIRRA 223
                         76.77779****996 PP
2Auxin_resp58.23.6e-20266346183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         a+++a++++ FevvY+Pra+ +eFv+ vekv+     ++ +GmR+kma e+ed s+ ++  Gtv+g  + ++    +  Wr+L+
  Bv1_000500_ghtj.t1 266 AVQKAENGMEFEVVYYPRAGLPEFVIGVEKVQM---YQWDIGMRVKMAQESEDGSRLTWyNGTVSGFLCNKNPALGGPLWRVLQ 346
                         68899************************9984...68*********************9********9999999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.09E-30108229IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.5E-34113225IPR015300DNA-binding pseudobarrel domain
CDDcd100179.48E-23120222No hitNo description
SMARTSM010191.2E-20121224IPR003340B3 DNA binding domain
PROSITE profilePS5086313.281121224IPR003340B3 DNA binding domain
PfamPF023627.2E-23121223IPR003340B3 DNA binding domain
PfamPF065071.4E-16266346IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MASDHRQRHC FYQQRREIKR EIWKACAGSL IQTSMVNSIV YYFPEGHIQQ ASSPVSISGV  60
MNLKNYYVCR VLELSFLADP DTDEVFVKYR LQPLENITNF VLQNSEKNNV VENKKNDVVS  120
FAKVLTPSDA NNGGGFSVPR FCADKIFPPL DFTADPPVQK ITITDMHGEG WDFRHIYRGT  180
PRRHLLTTGW SKFVNSKKLI AGDSVVFIMD ESNGGLFVGI RRAVKMSNED VSGWGLIPKP  240
PSTSGSGGGF SRAHRGRVPA EAIVEAVQKA ENGMEFEVVY YPRAGLPEFV IGVEKVQMYQ  300
WDIGMRVKMA QESEDGSRLT WYNGTVSGFL CNKNPALGGP LWRVLQVTWD EPEILQNMTN  360
VSPWQVEFIA PAPPIHAPLP PMKRLKGVQD SELLADREGD LPLPPMRFSS MMGHVNPPYF  420
SHETFPAGMQ GARQIPFLLT SLPNINNDST HKGCPDDKVD STMQKTEAVS TDLNIGSIPS  480
ETPSPDSQNS VHFFSMAATK PHSCNVTKIG STSFHLFGAF IQVEPRLANT NDISTEYDDS  540
STKCARKDVD KSLLDPDKKS DDGLSAQRFS GVDGDAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-691836751388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672559.10.0PREDICTED: auxin response factor 17
RefseqXP_010672606.10.0PREDICTED: auxin response factor 17
RefseqXP_010672677.10.0PREDICTED: auxin response factor 17
TrEMBLA0A1U7ZB881e-169A0A1U7ZB88_NELNU; Auxin response factor
STRINGXP_010672559.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-118auxin response factor 17