PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_002240_rapp.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NAC
Protein Properties Length: 292aa    MW: 33491.3 Da    PI: 6.5491
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_002240_rapp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.31.1e-51111391128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                         +ppGfrFhPt+eel+ +yL+kkv+++k++l +vi evd++k+ePwd+++k+k     +++wyfFs++dkky+tg+r+nrat +g+Wkatg+
  Bv1_002240_rapp.t1  11 VPPGFRFHPTEEELLLYYLRKKVANEKIDL-DVILEVDLNKLEPWDIQEKCKIgttPQNDWYFFSHKDKKYPTGTRTNRATIAGFWKATGR 100
                         69****************************.99**************964444222455******************************** PP

                 NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         dk ++s + + +g++ktLvfykgrap+g+k+dW+mheyrl
  Bv1_002240_rapp.t1 101 DKVIYS-NCKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139
                         ******.8889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-577174IPR003441NAC domain
PROSITE profilePS5100555.73211174IPR003441NAC domain
PfamPF023652.5E-2712139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0010047Biological Processfruit dehiscence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MNISVNGQSR VPPGFRFHPT EEELLLYYLR KKVANEKIDL DVILEVDLNK LEPWDIQEKC  60
KIGTTPQNDW YFFSHKDKKY PTGTRTNRAT IAGFWKATGR DKVIYSNCKR IGMRKTLVFY  120
KGRAPHGQKS DWIMHEYRLD ESTNTNNDSH VITIVRSGEF VQEEGWVVCR VFKKKNNVKA  180
LDSPIKCSTM APSETHSSST MLDSPCHDHD HDHDHDQDHE HDHDHDDQGA LEQIFQFMGG  240
DHKMYHTITS ATTTLDNNYG GSNDIDHLWS FTRSSSPSLG IDPLCHVSDS GI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-51817914170NO APICAL MERISTEM PROTEIN
1ut4_B1e-51817914170NO APICAL MERISTEM PROTEIN
1ut7_A1e-51817914170NO APICAL MERISTEM PROTEIN
1ut7_B1e-51817914170NO APICAL MERISTEM PROTEIN
4dul_A1e-51817914170NAC domain-containing protein 19
4dul_B1e-51817914170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00321DAPTransfer from AT2G46770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690154.11e-162PREDICTED: NAC domain-containing protein 43
SwissprotQ84WP61e-105NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A151SLX01e-112A0A151SLX0_CAJCA; NAC domain-containing protein 43
TrEMBLC6TI391e-113C6TI39_SOYBN; Uncharacterized protein
STRINGXP_010690154.11e-161(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.11e-100NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]