PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_002400_iagh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 457aa    MW: 51136.5 Da    PI: 7.0133
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_002400_iagh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.2e-14288334354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h e+Er+RR+++Ns+f  Lr+++P+      ++++Ka+ L  Av YI++L
  Bv1_002400_iagh.t1 288 MNHVEAERQRREKMNSRFYALRSVVPTV-----TRMDKASLLADAVAYINDL 334
                         589************************8.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.7E-4024200IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.837285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.12E-15288339No hitNo description
SuperFamilySSF474591.96E-17288355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-11289334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-17289354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-15291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MDDNMVISSS SSSSLISTTP LTQQQKLEFL LQNQQQWWNY AIFWQTSTNN VDNSSISLVW  60
GEGHFHGMKS PSSKPKKKPN LFVQVEDELD EGVSSMDDVV VTDAEWFYMT SPPRSYPLKQ  120
RNGGSGPGNT LAKAYTTGSL VWLSGAHYLR LYNCERAKEA HSHGLQTLVC IPVPNGVLEL  180
GSVESFEENW ALIQQAHSLF GPLSNLDHLG LDKPDFGIDR GFSLYEPGLF GGTSTTHQAQ  240
TQAQTQAQPD LMSSFEDFDS DGPVSRQRVV RKRGRRPITS REGQVVTMNH VEAERQRREK  300
MNSRFYALRS VVPTVTRMDK ASLLADAVAY INDLKNKISS LELQFQVTNN DRNTLMSSSS  360
GISNTNIHNN VVNSRIPLDV EVRVLGNEAM IRVQSENVNH PSARLMNVFK QLNLQVHHAS  420
VSTVEQMMLQ DVVIAKVPQE LRSGSLLKAA IRRTFEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-22222008192Transcription factor MYC3
4rqw_B1e-22222008192Transcription factor MYC3
4rs9_A1e-22222008192Transcription factor MYC3
4yz6_A1e-22222008192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691764.10.0PREDICTED: transcription factor MYC2
TrEMBLA0A0K9QWB90.0A0A0K9QWB9_SPIOL; Uncharacterized protein
STRINGXP_010691764.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-63bHLH family protein