PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_002710_kgfs.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family Dof
Protein Properties Length: 350aa    MW: 38777.3 Da    PI: 8.8515
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_002710_kgfs.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1252.4e-393798263
              zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                        k+++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss
  Bv1_002710_kgfs.t1 37 KDQNLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTQGGSLRNVPVGGGSRKNKRSSS 98
                        7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-263089IPR003851Zinc finger, Dof-type
PfamPF027012.0E-333895IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.2364195IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104379IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEEIQIPNNN NINSPTNINN SRATQVIGDQ RRARPQKDQN LNCPRCNSTN TKFCYYNNYS  60
LTQPRYFCKT CRRYWTQGGS LRNVPVGGGS RKNKRSSSSS SSSSSNPSST SIITNPNNPT  120
NKLIPDLNPP ISSLSHHLIT SSQNPKFLQG QDLNLAFPMQ GIFQPNNNEN HEPINIMNSN  180
NNTSSTTNNT CSTTTCSTPI SALELLRTGI ASRGSLNPYV PMPMPDSNTL YPSGFPNLQE  240
YKPNMNLFSS PGDHNNNVGS ADNNNNNNAA ARLLFPFADM NKLATSTPSL STTPQHHQHN  300
QHHQHEISDD QSKGGNDHHQ PQQQQQHHNH HHHQAPTTGY WSGMLGGGTW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6715736e-54KJ671573.1 Silene nutans clone SIL41 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694741.10.0PREDICTED: dof zinc finger protein DOF3.7
TrEMBLA0A0K9QVQ01e-111A0A0K9QVQ0_SPIOL; Uncharacterized protein
STRINGXP_010694741.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.42e-39Dof family protein