PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_002900_doao.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 665aa    MW: 73185.2 Da    PI: 7.075
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_002900_doao.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.1e-13494540455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Bv1_002900_doao.t1 494 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITELQ 540
                         799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.9E-5055242IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.13490539IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-18493552IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-14493544No hitNo description
Gene3DG3DSA:4.10.280.103.3E-18494554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10494540IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-17496545IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MTNTELGMGG GVVWNEEDKA MIASILGTRA FDYLISSPFT AETSLVSFEN NENIQNKLSD  60
LVERPNASNF SWNYGFFWQI SRAKSGEVVL SWGDGYCREP REGEESEATR ILNFRLEDES  120
HQKIRKRVLQ KLNTLFGGSD DDNLACRLDR VTDMEMFFLV SMYFSFPRGE GGPGSCFVSG  180
KHVWESDLLR SKSDYCVRSF LAKSAGIQTV ILIPTEFGVV ELGSVRAIGE NHDVLKALKF  240
AFASPPVVRP KPTPVFPVVV HKIEEEDAPA LTPSPAPAPA PVRSPAPAPA RSPTPAPAPA  300
PAAVPASVPT TSPVPVSGPF SNVRLVDRGL DGVPKIFGQN LNTASRPPFR EKLAVKRMED  360
RHWDPYANGN KLSFAGQSPR NGLHGSNWAN IPGVKHATTT ELYSPQNTRL QEYVNGIRSE  420
YRLNQFHQQK PVQMEIDFSG ATSRPTVISQ PGSAESEHSD AEVSGRDDRA GPSDDRKPRK  480
RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG DAISYITELQ  540
KKLKDMEADR EKHNSTSKDT TSGTEANSVA DTQVQAPDVE VQAMHDEVVV RVSCPLDSHP  600
VARVIRAFKD SEINIVDSKL AAGTDTVFHT FVIKSQSSEQ LTKEKLLSAF SHESKPLQAP  660
SSTGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-26488550264Transcription factor MYC2
5gnj_B1e-26488550264Transcription factor MYC2
5gnj_E1e-26488550264Transcription factor MYC2
5gnj_F1e-26488550264Transcription factor MYC2
5gnj_G1e-26488550264Transcription factor MYC2
5gnj_I1e-26488550264Transcription factor MYC2
5gnj_M1e-26488550264Transcription factor MYC2
5gnj_N1e-26488550264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1475483RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696336.10.0PREDICTED: transcription factor bHLH13
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A0K9QUK20.0A0A0K9QUK2_SPIOL; Uncharacterized protein
STRINGXP_010696336.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-110bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]