PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_003570_quwj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 322aa    MW: 36493.4 Da    PI: 4.785
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_003570_quwj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-1895144255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp+    r +r++lg+f taeeAa  +++a+ kl+g
  Bv1_003570_quwj.t1  95 KYRGVRQRP-WGKYAAEIRDPV----RrTRIWLGTFETAEEAAFVYDKAAIKLRG 144
                         8********.**********63....45*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.8E-3094152IPR001471AP2/ERF domain
SMARTSM003801.1E-3495158IPR001471AP2/ERF domain
CDDcd000181.96E-3195151No hitNo description
PfamPF008471.1E-1095144IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-2195151IPR016177DNA-binding domain
PROSITE profilePS5103222.35295152IPR001471AP2/ERF domain
PRINTSPR003671.8E-1096107IPR001471AP2/ERF domain
PRINTSPR003671.8E-10118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MRSLTAVKYS EQKIITKKTL LLSPTIPSPK IVRISVRDDD ATDSSDDEDN LPSCRTRVIK  60
HISEIRFEVG LPEQPTKAQA QPKRGDKKQN GSTRKYRGVR QRPWGKYAAE IRDPVRRTRI  120
WLGTFETAEE AAFVYDKAAI KLRGPHAQTN FIQPPSLMTS PSVEVTSLSD DDEDEEHTTH  180
HSLRSPTSVL RHDDVEERET GKGKSHKKMK KETTRSNSSS SCCDFVGDLK PEEQVMSLPG  240
ILLEDTSSIL NEIFFNDDAN SSMFSLDNLL PDLSFDDHDD FKAFPASFDS DFDAQDFSSL  300
DKSQVDDYFN DIDFQDFSKI DD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2294151159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2294151462ATERF1
3gcc_A2e-2294151462ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010669419.10.0PREDICTED: ethylene-responsive transcription factor CRF6
TrEMBLA0A0K9QXU41e-86A0A0K9QXU4_SPIOL; Uncharacterized protein
STRINGXP_010669419.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.16e-35cytokinin response factor 6