PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_003850_jyhg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NF-YB
Protein Properties Length: 262aa    MW: 28213.7 Da    PI: 6.6017
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_003850_jyhg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB144.91.9e-4557149294
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         re++ ++Pianv+rim+++lP +ak++++ake++qecvsefisf+tsea++ cq e+rkti+++dl+ a++ lGf++yv+pl++yl+kyre
  Bv1_003850_jyhg.t1  57 REHELYMPIANVVRIMRRALPPHAKVADEAKEMLQECVSEFISFITSEANETCQLEHRKTITAEDLIGAMSRLGFDHYVQPLSIYLQKYRE 147
                         78899*************************************************************************************9 PP

               NF-YB  93 le 94 
                          e
  Bv1_003850_jyhg.t1 148 SE 149
                         87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.8E-4455149IPR009072Histone-fold
SuperFamilySSF471138.07E-3460149IPR009072Histone-fold
PfamPF008081.7E-2363126IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.6E-1590108No hitNo description
PRINTSPR006151.6E-15109127No hitNo description
PRINTSPR006151.6E-15128146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MPLVGDANGL NRTTNNIQGS MPNPSQIQDN IGNKAPTLRT NHSTPILRSK SSLAPFREHE  60
LYMPIANVVR IMRRALPPHA KVADEAKEML QECVSEFISF ITSEANETCQ LEHRKTITAE  120
DLIGAMSRLG FDHYVQPLSI YLQKYRESEM LPLIPRRGVG NIGTEATLVT PTTNVLPPFA  180
VVHPQFAMFS TSANNGGNYH DGSGTSSGPI SMSHLYTATA SEGSGPSLAL GIGGDPSSSD  240
SLGPSGSPQA GLDFYNPYGH YK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A8e-4457147797NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019103535.10.0PREDICTED: nuclear transcription factor Y subunit B-9
TrEMBLA0A0K9R0E71e-112A0A0K9R0E7_SPIOL; Uncharacterized protein
STRINGXP_010669682.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.22e-44nuclear factor Y, subunit B6