PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv1_003850_jyhg.t2

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

NF-YB

Protein Properties

Length: 304aa MW: 32919.1 Da PI: 6.1707

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv1_003850_jyhg.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	144.4	2.6e-45	99	191	2	94
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 re++ ++Pianv+rim+++lP +ak++++ake++qecvsefisf+tsea++ cq e+rkti+++dl+ a++ lGf++yv+pl++yl+kyre Bv1_003850_jyhg.t2 99 REHELYMPIANVVRIMRRALPPHAKVADEAKEMLQECVSEFISFITSEANETCQLEHRKTITAEDLIGAMSRLGFDHYVQPLSIYLQKYRE 189 78899*************************************************************************************9 PP NF-YB 93 le 94 e Bv1_003850_jyhg.t2 190 SE 191 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.6E-44	97	191	IPR009072	Histone-fold
SuperFamily	SSF47113	1.12E-33	102	191	IPR009072	Histone-fold
Pfam	PF00808	2.2E-23	105	168	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.2E-15	132	150	No hit	No description
PRINTS	PR00615	2.2E-15	151	169	No hit	No description
PRINTS	PR00615	2.2E-15	170	188	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MQITPLLFPS LADDQNALTY LEESLSHREL RVAPLFPTQL GPMPLVGDAN GLNRTTNNIQ 60 GSMPNPSQIQ DNIGNKAPTL RTNHSTPILR SKSSLAPFRE HELYMPIANV VRIMRRALPP 120 HAKVADEAKE MLQECVSEFI SFITSEANET CQLEHRKTIT AEDLIGAMSR LGFDHYVQPL 180 SIYLQKYRES EMLPLIPRRG VGNIGTEATL VTPTTNVLPP FAVVHPQFAM FSTSANNGGN 240 YHDGSGTSSG PISMSHLYTA TASEGSGPSL ALGIGGDPSS SDSLGPSGSP QAGLDFYNPY 300 GHYK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-43	99	189	7	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019103535.1	0.0	PREDICTED: nuclear transcription factor Y subunit B-9
TrEMBL	A0A0K9R0E7	1e-111	A0A0K9R0E7_SPIOL; Uncharacterized protein
STRING	XP_010669682.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	7e-44	NF-YB family protein