PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_003980_zfhn.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 225aa    MW: 25823.7 Da    PI: 6.9421
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_003980_zfhn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.2e-32145203159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vk++ +prsYYrCt+ +C+vkk+v+r ++d+++v++tYeg Hnh+
  Bv1_003980_zfhn.t1 145 LDDGYRWRKYGQKSVKNNIYPRSYYRCTHMTCNVKKQVQRLSKDNSIVVTTYEGVHNHP 203
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-33132203IPR003657WRKY domain
SuperFamilySSF1182901.26E-28137204IPR003657WRKY domain
PROSITE profilePS5081129.115140205IPR003657WRKY domain
SMARTSM007743.4E-37145204IPR003657WRKY domain
PfamPF031067.8E-26146203IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDELQNVVAS DHHHHIPSSL FSPHYADLHQ CNQTSNLDPS INVSDAVDWS SFLINSPTVN  60
IACDQDDDKL MIDCDLEHDD QQINGSDHLL GGGNNEDERR RSCVIDHNKM DSISKRSSNS  120
SSTRSRKAKV IPRFAFQTRS KEDILDDGYR WRKYGQKSVK NNIYPRSYYR CTHMTCNVKK  180
QVQRLSKDNS IVVTTYEGVH NHPCEKLMEA LSPLLNQMQF LSRLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-26135202774Probable WRKY transcription factor 4
2lex_A3e-26135202774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010669789.11e-169PREDICTED: probable WRKY transcription factor 71
SwissprotQ9FFS36e-53WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLM5X3042e-58M5X304_PRUPE; Uncharacterized protein
STRINGXP_010669789.11e-168(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.11e-53WRKY DNA-binding protein 43