PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_005490_zgmm.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GATA
Protein Properties Length: 346aa    MW: 37719.9 Da    PI: 5.8033
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_005490_zgmm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA512e-16199235135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Bv1_005490_zgmm.t1 199 CQHCGVSEndTPAMRRGPAGPRTLCNACGLMWANKGT 235
                         **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.3046095IPR010399Tify domain
SMARTSM009795.8E-76095IPR010399Tify domain
PfamPF062002.2E-96394IPR010399Tify domain
PfamPF062032.0E-13127168IPR010402CCT domain
PROSITE profilePS5101711.816127169IPR010402CCT domain
PROSITE profilePS501148.827193250IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-10193247IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-11196245No hitNo description
Gene3DG3DSA:3.30.50.105.9E-14198240IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.83E-15198240No hitNo description
PfamPF003203.0E-14199235IPR000679Zinc finger, GATA-type
PROSITE patternPS003440199226IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAANPKPLQS RPYEEDVPVD GEEFGESDGD ESTDDGIDED QTVRMRREKR GVGIYVGPSS  60
SSRTSELTLS FEGEVFVFPA VTPEKVKAVL LLLGGRDNHV GVPTVEVACG QDNRVTGSPT  120
RSNVSNRIAS LVRFREKRKE RCYDNRIRYT IRKEVAQRMH RKNGQFASLR EGSASSNLEA  180
KKNLPNGGTL GPESVSNKCQ HCGVSENDTP AMRRGPAGPR TLCNACGLMW ANKGTLRNLS  240
RARRSFILDE AELGSLVDRK PSIVEENSHA NPCKLRTLKG ETSAVTIAYV NSFAEPRKEN  300
SHGIADATSM LTEIAVDSSG NFDKQDTLAE LDDSSGTDID IAANSD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671467.10.0PREDICTED: GATA transcription factor 19
RefseqXP_019103850.10.0PREDICTED: GATA transcription factor 19
SwissprotQ8GXL73e-60GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A0K9RD290.0A0A0K9RD29_SPIOL; Uncharacterized protein
STRINGXP_010671467.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.14e-59ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]