PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_005530_awpg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GATA
Protein Properties Length: 297aa    MW: 32882.4 Da    PI: 6.3464
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_005530_awpg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.43e-16213249135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg ++  Tp++Rrgp+g++tLCnaCGl ++ kg+
  Bv1_005530_awpg.t1 213 CTHCGISSksTPMMRRGPNGPRTLCNACGLVWANKGT 249
                         *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.6E-1170105IPR010399Tify domain
PROSITE profilePS5132014.47670105IPR010399Tify domain
PfamPF062007.3E-1273104IPR010399Tify domain
PROSITE profilePS5101712.411146188IPR010402CCT domain
PfamPF062032.1E-14146188IPR010402CCT domain
SMARTSM004015.8E-11207260IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.09E-12210261No hitNo description
Gene3DG3DSA:3.30.50.104.2E-15212254IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.8E-14213249IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.196213264IPR000679Zinc finger, GATA-type
CDDcd002027.04E-15213258No hitNo description
PROSITE patternPS003440213240IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MYGHEQHLSV SPSPTQLQES RNLIDESDVV QGVEESIDDH YHHHNQQRCS DDGSVAFEGD  60
SIYAVDNFGR IEGSDQLTLS FRGQVYVFDS VTPDKVEAVL LVLGGNVGGS APSLATPGTE  120
VPQVTHGSQQ LQDMTVFPGR SSQPQREASL NRFRQKRKER RFDKLIRYNV RQEVAMRMHR  180
SKGQFTSTKK GDESSGCNAQ DSGSDETQLE TLCTHCGISS KSTPMMRRGP NGPRTLCNAC  240
GLVWANKGTL RDLKKQDQYV MPNEMTGGSP FRATDILGEA KYVNFGENDS QALVVQH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160QKRKERR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671518.10.0PREDICTED: GATA transcription factor 24 isoform X1
SwissprotQ8GXL73e-67GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A0K9R6Z51e-167A0A0K9R6Z5_SPIOL; Uncharacterized protein
STRINGXP_010671518.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.27e-65ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]