PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv1_006740_agqt.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

TALE

Protein Properties

Length: 671aa MW: 74094.4 Da PI: 6.5966

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv1_006740_agqt.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.9	2e-09	446	483	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +qV +WF N R + Bv1_006740_agqt.t1 446 FEHflHPYPKDSEKIMLARQTGLTRSQVANWFINARVR 483 665559******************************88 PP
2	BELL	123.1	1.2e-39	312	383	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+k kL s+l+eVd+rYkqy++q+q+++ssF++vag+g+akpYt+lAlk+iSrhFrcL+daia+qi Bv1_006740_agqt.t1 312 ERQELQNKLDKLHSMLDEVDRRYKQYCQQMQILVSSFDVVAGVGAAKPYTALALKTISRHFRCLRDAIASQI 383 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	6.0E-55	241	381	IPR006563	POX domain
Pfam	PF07526	2.6E-50	245	380	IPR006563	POX domain
PROSITE profile	PS50071	12.244	424	487	IPR001356	Homeobox domain
CDD	cd00086	1.00E-12	427	488	No hit	No description
SMART	SM00389	7.4E-10	427	491	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.1E-17	428	494	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-28	430	493	IPR009057	Homeodomain-like
Pfam	PF05920	2.2E-17	444	483	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
MATYYPTSSA QLDVLSSPYV RDQKFTSYSG SPLLHGNMMM YLTSNSSPGS FSEISPGSSM 60 NPQNGVEIPS SINGRNEMMF IPPTGDSMCM QSMGGPLNSG PGENIGGSVP GELQLTSRSQ 120 MNMVDGEQNL QGLSLSLSTQ MSTAVSSSPF QYQYSNPGLS SVLSPHLPLS AENNVRSMSC 180 KIDEASPNKD MRNTEYFGYE MQGEGHNSNT IRFGALNNPQ YSMNPKAMNC NSYQYEQAGM 240 AATTLVKSKY LKATQLLLDE VVNVREALKR SDSGKDQNPS KVDEGSKESK GGSQTASEAN 300 ESGSAPEISP AERQELQNKL DKLHSMLDEV DRRYKQYCQQ MQILVSSFDV VAGVGAAKPY 360 TALALKTISR HFRCLRDAIA SQIQATRKSL GEQDNGLGGV IPRLRYVDQQ LRQQRALQQF 420 GMMRHAWRPQ RGLPENAVTI LRAWLFEHFL HPYPKDSEKI MLARQTGLTR SQVANWFINA 480 RVRLWKPMVE EMYKEEFGEA DLLNSRSSPE NTPKLTREKS WGSEDRREEM QESSTSIAYD 540 AHDSKINVSQ SGVPLGNNND NHGFFSNNGT LSSPDPNGGG HGHGHGHGHP HHLMVNPGAY 600 QMSELGNFSV DNQVSLALGL RHREGDVTFR GNTTTEASMG VANSEYNPYL EQVNQQHRFG 660 NPSHILNDFV A

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

MATYYPTSSA QLDVLSSPYV RDQKFTSYSG SPLLHGNMMM YLTSNSSPGS FSEISPGSSM  60
NPQNGVEIPS SINGRNEMMF IPPTGDSMCM QSMGGPLNSG PGENIGGSVP GELQLTSRSQ  120
MNMVDGEQNL QGLSLSLSTQ MSTAVSSSPF QYQYSNPGLS SVLSPHLPLS AENNVRSMSC  180
KIDEASPNKD MRNTEYFGYE MQGEGHNSNT IRFGALNNPQ YSMNPKAMNC NSYQYEQAGM  240
AATTLVKSKY LKATQLLLDE VVNVREALKR SDSGKDQNPS KVDEGSKESK GGSQTASEAN  300
ESGSAPEISP AERQELQNKL DKLHSMLDEV DRRYKQYCQQ MQILVSSFDV VAGVGAAKPY  360
TALALKTISR HFRCLRDAIA SQIQATRKSL GEQDNGLGGV IPRLRYVDQQ LRQQRALQQF  420
GMMRHAWRPQ RGLPENAVTI LRAWLFEHFL HPYPKDSEKI MLARQTGLTR SQVANWFINA  480
RVRLWKPMVE EMYKEEFGEA DLLNSRSSPE NTPKLTREKS WGSEDRREEM QESSTSIAYD  540
AHDSKINVSQ SGVPLGNNND NHGFFSNNGT LSSPDPNGGG HGHGHGHGHP HHLMVNPGAY  600
QMSELGNFSV DNQVSLALGL RHREGDVTFR GNTTTEASMG VANSEYNPYL EQVNQQHRFG  660
NPSHILNDFV A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	2e-16	433	490	1	58	Homeobox protein Meis1
4xrs_B	2e-16	433	490	1	58	Homeobox protein Meis1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269\|PubMed:16513846}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010672737.1	0.0	PREDICTED: BEL1-like homeodomain protein 3 isoform X1
Refseq	XP_010672747.1	0.0	PREDICTED: BEL1-like homeodomain protein 3 isoform X1
Refseq	XP_010672754.1	0.0	PREDICTED: BEL1-like homeodomain protein 3 isoform X1
Refseq	XP_019104073.1	0.0	PREDICTED: BEL1-like homeodomain protein 3 isoform X1
Swissprot	Q9FWS9	1e-119	BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBL	A0A0K9QQ74	0.0	A0A0K9QQ74_SPIOL; Uncharacterized protein
STRING	XP_010672737.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75410.2	1e-112	BEL1-like homeodomain 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]