PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_008110_dyzp.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ZF-HD
Protein Properties Length: 310aa    MW: 33488.9 Da    PI: 6.8862
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_008110_dyzp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.71.2e-3266123260
         ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                         ++vrY+eClkNhA+++GghavDGCgEfm++ g+eg+ +alkCaAC+CHRnFHR+e++++
  Bv1_008110_dyzp.t1  66 SAVRYRECLKNHAVNIGGHAVDGCGEFMAA-GAEGSLDALKCAACNCHRNFHRKETDTN 123
                         579**************************9.999*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.1E-2968120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.4E-2969119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-2369122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.04970119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.25E-18234308IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-31239309IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-25247303IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEFEDEHDEE QEEEDEDEDE ITIPPPPPQP AAIIPPSYDS ITGGNSVPSR PRVNPPSGGG  60
GERRSSAVRY RECLKNHAVN IGGHAVDGCG EFMAAGAEGS LDALKCAACN CHRNFHRKET  120
DTNNGDNNST MISSPPIQSP AAAAAAAAAP ASTMYPQFSA YYRTPAPPAS AYHQQHQHQH  180
QHPHSHHMRH HYSNTPLAAL PSTSGGTHSG DMADDMSHPS SSGGDGRRES GGGGGGGGGS  240
AMMMVPKKRH RTKFSQEQKD KMLAFAEKLG WRIQKHDEAA VQQFCAEVQV KRQVLKVWMH  300
NNKHTLGKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-262483051875ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229239SGGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675490.10.0PREDICTED: zinc-finger homeodomain protein 1-like
SwissprotQ6YXH59e-81ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A0K9RPV61e-119A0A0K9RPV6_SPIOL; Uncharacterized protein
STRINGXP_010675490.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-31homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]