PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_009470_kyxu.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 383aa    MW: 41581 Da    PI: 5.8579
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_009470_kyxu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20175224255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Bv1_009470_kyxu.t1 175 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 224
                         59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.08E-33174234No hitNo description
PROSITE profilePS5103223.143175232IPR001471AP2/ERF domain
SMARTSM003805.4E-38175238IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-32175233IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-23175233IPR016177DNA-binding domain
PfamPF008474.0E-14176224IPR001471AP2/ERF domain
PRINTSPR003673.9E-11176187IPR001471AP2/ERF domain
PRINTSPR003673.9E-11198214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MATTMDMIYS SSSDCAGCLD PLGNELMEAL SPFMKTSPSS SPPPSSSLST LPEHSTISST  60
STSTTQSYSS TSFSLSSFPQ DPTSFFQDGY CYSQQAPFFG LNHPDPSTSL GLNNLPQAQF  120
NYPIAQFNYP QAQQQVTYSY PPPLPSYQST NMNSFLSPKP IPMKQSGTPP KPTKLYRGVR  180
QRHWGKWVAE IRLPKNRTRL WLGTFDTAEE AALAYDKAAY KLRGDFARLN FPNLRHEGAH  240
IGGEFGEYKP LHSSVNAKLE AICESLAKQG NEKHQGKSGK SKKTKGVVTV TSSSSSSSCS  300
SSLVAAASSS NDDQPQQQQQ QQQQMPDVVK AECASDSEVG SGGSSPLSDL TFGDADDLGV  360
ENLNYLLEKC PSHEIDWDAL LSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22174232160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676915.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4
TrEMBLA0A088FRQ71e-151A0A088FRQ7_SUASA; DREBb
STRINGXP_010676915.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-63related to AP2 4