PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_010150_oexy.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MIKC_MADS
Protein Properties Length: 216aa    MW: 25320.8 Da    PI: 6.7971
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_010150_oexy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.46.9e-27958150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krien++nrqvt+skRrng++KKA E+ vLCda+v+v+if+++gk++ y 
  Bv1_010150_oexy.t1  9 KRIENSTNRQVTYSKRRNGLIKKATEITVLCDAKVSVVIFANNGKMHAYN 58
                        79*********************************************996 PP
2K-box79.21e-2671165195
               K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                         y++ + k+l++ak+e+l++e++++kke+enLq e+Rhl+Ged+ sL + eL++Le++L++++  iR+k++e++ ++ +++ + e+e ++ n
  Bv1_010150_oexy.t1  71 YHEITRKRLWDAKHENLSNEIDRIKKENENLQIELRHLKGEDVASLAYPELMRLEDALQNGIAGIRDKQMEIYAMHKKNTTMLEEEENQLN 161
                         67778899*********************************************************************************** PP

               K-box  92 kaLr 95 
                          +L+
  Bv1_010150_oexy.t1 162 YMLH 165
                         9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.455161IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-34296IPR002100Transcription factor, MADS-box
CDDcd002656.01E-38280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-27323IPR002100Transcription factor, MADS-box
PfamPF003197.6E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.1E-1782164IPR002487Transcription factor, K-box
PROSITE profilePS5129713.44484170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT YSKRRNGLIK KATEITVLCD AKVSVVIFAN NGKMHAYNSP  60
STTVEDILES YHEITRKRLW DAKHENLSNE IDRIKKENEN LQIELRHLKG EDVASLAYPE  120
LMRLEDALQN GIAGIRDKQM EIYAMHKKNT TMLEEEENQL NYMLHCLHKQ EIMDADIREM  180
NGSVCNNTAE ERDYHYHQMP FGFRVQPMQP NLQERM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A4e-16191183MEF2 CHIMERA
6bz1_B4e-16191183MEF2 CHIMERA
6bz1_C4e-16191183MEF2 CHIMERA
6bz1_D4e-16191183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677661.11e-162PREDICTED: floral homeotic protein PMADS 2
SwissprotQ0HA253e-95MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLQ413531e-115Q41353_SILLA; SLM2 protein
STRINGXP_010677661.11e-161(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.12e-78MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]