PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_010260_phfk.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family FAR1
Protein Properties Length: 488aa    MW: 55157.2 Da    PI: 7.7123
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_010260_phfk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.71.3e-1198198288
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkr...tfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevt 79 
                         +Y++YAk+ GF ++++++ +s+++ge +kr    ++C + gk+ +++++          + +e + +++++++C  ++  + +++g+w++ 
  Bv1_010260_phfk.t1  98 YYKQYAKQEGFGIVRAAQAYSSKSGEEKKRrsgSWTCECFGKPVRRRSRvgsrvvsnnvQCDEGHVNKSKKCECPVNIYASVNENGEWVLR 188
                         9************9998888855555444412269********999999999999998777777899************************ PP

                FAR1  80 kleleH.nHe 88 
                         k++ eH nH+
  Bv1_010260_phfk.t1 189 KVVVEHeNHD 198
                         ******7775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-998198IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MDIIEASSSM GVVQVEHDGK MHNNGDGGEE DAPHLYELNG EMYVGDRDTV EEVQVEGGSI  60
VAVTPDGRVS GCRIGEDGIV SEPFVGMVFP SYDEVESYYK QYAKQEGFGI VRAAQAYSSK  120
SGEEKKRRSG SWTCECFGKP VRRRSRVGSR VVSNNVQCDE GHVNKSKKCE CPVNIYASVN  180
ENGEWVLRKV VVEHENHDPT PSKSRHISMY RKEELYNHVR RRLFNDYNSG LKIPQIHGCL  240
ARERNGVENW VVTERDLRNE VSMVKRLKLK DGDANAMLAY FQKMSANNQI FFHMHRLDDK  300
NTLKDIMWVD ARSRAAYEEF GDVVCFYSAY LTNEYELPFA NFVGKADVYE DLVGVVTEAL  360
QLLDIRVDEN VAMIRNGVNG EVEKGKKSSP PTVEKGKKRR MDLETHEVDP LEKMNVIDPP  420
NRNAAHRTRS VRYYTAAEES RKKKACGEKA SKKKAVTKKK ENGSVGLDET SCCAGGKPRQ  480
NMRLSIRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679375.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
STRINGXP_010679375.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-20far-red elongated hypocotyls 3