PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv1_010940_yjik.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Dof

Protein Properties

Length: 274aa MW: 30277.8 Da PI: 4.5096

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv1_010940_yjik.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.9	1.9e-37	34	88	7	61
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk+++s Bv1_010940_yjik.t1 34 NCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRS 88 8***************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-22	15	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.584	33	87	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-31	34	87	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	35	71	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MITSSNDHLF HNLPPRPITT DRTWSNAHIV PAPNCPRCAS SNTKFCYYNN YSLSQPRYFC 60 KGCRRYWTKG GSLRNVPVGG GCRKSRRSRA SRGFSSTASG PHSDDHLSPN SSSTGSESGC 120 PDIDMAAVFA KFLNPGHDNV NEEINEAITN TSSDASYGSP ISSSCGLENN FEYEKLADDI 180 LDLVPSDHHP HLQTDEVNQG FISPDLTSFD DLIEDVFWSE DTNFSGFTWQ PVAQIQEFDS 240 PIPPADELQN STNLFSSDNW SYFDSTGFEA FSGP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010680114.1	0.0	PREDICTED: dof zinc finger protein DOF3.5
TrEMBL	A0A0K9RZP9	1e-130	A0A0K9RZP9_SPIOL; Uncharacterized protein
STRING	XP_010680114.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	7e-32	Dof family protein