PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv1_011220_zfhk.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

NAC

Protein Properties

Length: 361aa MW: 40882.9 Da PI: 7.7313

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv1_011220_zfhk.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.1	1.4e-52	14	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPt+eel+ +yLkkkv+ + ++l +vi+evd++k+ePwdL+ ++ + ++ewyfFs++dkky+tg+r+nrat +g+Wkatg+ Bv1_011220_zfhk.t1 14 VPPGFRFHPTEEELLYYYLKKKVSYEAIDL-DVIREVDLNKLEPWDLKDrcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATIAGFWKATGR 103 69**************************.9***********943444442456**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dk++++ + + +g++ktLvfy+grap+g+ktdW+mheyrl Bv1_011220_zfhk.t1 104 DKAIYHGNAKRIGMRKTLVFYTGRAPHGHKTDWIMHEYRL 143 **999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-57	9	164	IPR003441	NAC domain
PROSITE profile	PS51005	56.812	14	164	IPR003441	NAC domain
Pfam	PF02365	5.0E-27	15	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MMSGCGSGSG QVSVPPGFRF HPTEEELLYY YLKKKVSYEA IDLDVIREVD LNKLEPWDLK 60 DRCRIGSGPQ NEWYFFSHKD KKYPTGTRTN RATIAGFWKA TGRDKAIYHG NAKRIGMRKT 120 LVFYTGRAPH GHKTDWIMHE YRLNDDHLQL QQEDGWVICR VFKKKNHGRG LQPELLEEDC 180 ENYSVNHPSS SHLMKPSSNM TTSSTTLLPP RQNGYSTQPS MFPNNYTNYT LDGTMHLPQL 240 SSLDSVSPNG STLFTTMDNV LKLSTSLAGG ILNPQQLLAA GVTERLANGG EWGFLDELLA 300 NYQSLEQQQQ QQQQQQEASL NKIATGNHDI IGMSSTSGLQ HQHKFPFQYL GSELDLLRFS 360 K

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MMSGCGSGSG QVSVPPGFRF HPTEEELLYY YLKKKVSYEA IDLDVIREVD LNKLEPWDLK  60
DRCRIGSGPQ NEWYFFSHKD KKYPTGTRTN RATIAGFWKA TGRDKAIYHG NAKRIGMRKT  120
LVFYTGRAPH GHKTDWIMHE YRLNDDHLQL QQEDGWVICR VFKKKNHGRG LQPELLEEDC  180
ENYSVNHPSS SHLMKPSSNM TTSSTTLLPP RQNGYSTQPS MFPNNYTNYT LDGTMHLPQL  240
SSLDSVSPNG STLFTTMDNV LKLSTSLAGG ILNPQQLLAA GVTERLANGG EWGFLDELLA  300
NYQSLEQQQQ QQQQQQEASL NKIATGNHDI IGMSSTSGLQ HQHKFPFQYL GSELDLLRFS  360
K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-48	11	166	14	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-48	11	166	14	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-48	11	166	14	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-48	11	166	14	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-48	11	169	17	173	NAC domain-containing protein 19
3swm_B	1e-48	11	169	17	173	NAC domain-containing protein 19
3swm_C	1e-48	11	169	17	173	NAC domain-containing protein 19
3swm_D	1e-48	11	169	17	173	NAC domain-containing protein 19
3swp_A	1e-48	11	169	17	173	NAC domain-containing protein 19
3swp_B	1e-48	11	169	17	173	NAC domain-containing protein 19
3swp_C	1e-48	11	169	17	173	NAC domain-containing protein 19
3swp_D	1e-48	11	169	17	173	NAC domain-containing protein 19
3ulx_A	2e-48	7	167	8	171	Stress-induced transcription factor NAC1
4dul_A	2e-48	11	166	14	167	NAC domain-containing protein 19
4dul_B	2e-48	11	166	14	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:19081078, ECO:0000269\|PubMed:20197506}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010680399.1	0.0	PREDICTED: NAC domain-containing protein 76
Refseq	XP_019107045.1	0.0	PREDICTED: NAC domain-containing protein 76
Swissprot	Q9MA17	1e-108	SMB_ARATH; Protein SOMBRERO
TrEMBL	A0A0K9RU34	1e-170	A0A0K9RU34_SPIOL; Uncharacterized protein
STRING	XP_010680399.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	3e-88	NAC family protein

Publications ? help Back to Top
Fendrych M, et al. Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis. Curr. Biol., 2014. 24(9): p. 931-40 [PMID:24726156] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]