PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_011970_tsyx.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 457aa    MW: 49765 Da    PI: 6.5204
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_011970_tsyx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.7e-20220269255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Bv1_011970_tsyx.t1 220 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAESAARAYDEAALRFRG 269
                         7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.567220277IPR001471AP2/ERF domain
SMARTSM003801.4E-36220283IPR001471AP2/ERF domain
PfamPF008472.8E-14220269IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-33220278IPR001471AP2/ERF domain
CDDcd000186.19E-33220278No hitNo description
SuperFamilySSF541713.14E-22220277IPR016177DNA-binding domain
PRINTSPR003671.1E-11221232IPR001471AP2/ERF domain
PRINTSPR003671.1E-11243259IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MCLSKVANQR EYQGFPSSSS GGGRRINGGD EERESSTTTV STEEGVNMVV ADYQQGGLSE  60
AEAEVAVRPP PVYRTNWETS AMVMALTDVV SGRGGGEWSD VYSYGYPDTS SKTSVGQKRG  120
REDTGSASGG GELGDIPFMY GGFGGSSGGR GGGGESSTSA SGVKEEIHIP SPVQTQSRSQ  180
SSSIVSTTTT ITSSSQPQRT TTNTNASANE EPQSGERKRR YRGVRQRPWG KWAAEIRDPH  240
KAARVWLGTF DTAESAARAY DEAALRFRGN RAKLNFPEFV QSIPPPARPS LPTTTGISPV  300
PVPGSIFPTN RVSQTIHFQQ QQYPSQHQQH QHQHQHQHQQ QQQQQQQQQN TADVARDYWE  360
YSQLLQSSTD FNFPGFGHIL YPSISRELVA PDPPVSFSSP SLSFSSMPAN LQYPQNISGE  420
QTMTFRPPTQ GSNSGSSSFT ESYWPESNPY QPPSSSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-23219277160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147153GGRGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681129.10.0PREDICTED: ethylene-responsive transcription factor ABR1
TrEMBLA0A0K9QNR38e-91A0A0K9QNR3_SPIOL; Uncharacterized protein
STRINGXP_010681129.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-28ethylene response factor 110