PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_012590_kwxx.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MIKC_MADS
Protein Properties Length: 189aa    MW: 21538.2 Da    PI: 7.8873
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_012590_kwxx.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.75.4e-27958150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krien   rqvtf+kRr+g+lKKA+ELSvLCda+v v+ifs++gklye +
  Bv1_012590_kwxx.t2  9 KRIENPVHRQVTFCKRRTGLLKKAKELSVLCDADVGVVIFSPQGKLYELA 58
                        79*********************************************965 PP
2K-box35.35e-13921621686
               K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                         +++ e++ +  ei+ L++ +  +lG + + +++ eL+ +e++Le+ + +iR++K+++++++i+ l++k  e
  Bv1_012590_kwxx.t2  92 ESKDEVNMMTHEIKLLEKGLWSILGGGEGAMTMDELHVMEKHLESWICQIRTTKMNIMFQEIQALKNKIGE 162
                         6789**************************************************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.913161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-29174IPR002100Transcription factor, MADS-box
CDDcd002651.16E-40276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-27323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-251056IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.58790178IPR002487Transcription factor, K-box
PfamPF014869.3E-1393160IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MARGKVQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD ADVGVVIFSP QGKLYELATK  60
GTMQGLIERY MKCTNGFHVA EPAAAIEKCM LESKDEVNMM THEIKLLEKG LWSILGGGEG  120
AMTMDELHVM EKHLESWICQ IRTTKMNIMF QEIQALKNKI GEQEGFYSFE QLTTNTPYAL  180
TIPSEIYQY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683240.11e-140PREDICTED: agamous-like MADS-box protein AGL12 isoform X2
SwissprotQ388411e-72AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A2R6Q1915e-81A0A2R6Q191_ACTCH; Agamous-like MADS-box protein
STRINGXP_010683233.11e-136(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.16e-75AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]