PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_012890_mdoq.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family G2-like
Protein Properties Length: 337aa    MW: 37099.3 Da    PI: 7.2995
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_012890_mdoq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.26.5e-32133186255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Bv1_012890_mdoq.t1 133 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 186
                         9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-15130187IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-28131187IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-24133186IPR006447Myb domain, plants
PfamPF002495.6E-7134185IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDLSLQISPP SISSNHFDTK ELMRKPVSFY SDRSSTTAES GSSAGSDVSY HSEEPVLSLG  60
FDYMVHCNNG IIGSNVPLVR GPFSSCSNSN SYNHPHYNIH QFNDHQPQIY GHDFKRNSRS  120
TTMSGVKRSV RAPRMRWTST LHAHFVHAVQ LLGGHERATP KSVLELMNVK DLTLAHVKSH  180
LQMYRTVKST DKAASASTFS SSGLALEEHN MGSTQRSGMI DQEVIIDRGF SCEKADSNPS  240
YFPPTSLGKT NLGSCLSSLD ANEGTNLNHF CSHSFNVKAN GRDGVMNSSN MEQERLGLVI  300
GCFSSADSLL NLEFTLGRPS RQIDYADSPH EMTLLKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-17134188357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-17134188357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-17134188357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-17134188357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2719891e-57KP271989.1 UNVERIFIED: Populus trichocarpa isolate Potri.014G037200_BESC-125 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684003.10.0PREDICTED: probable transcription factor KAN4
TrEMBLA0A0K9QZC81e-92A0A0K9QZC8_SPIOL; Uncharacterized protein
STRINGXP_010684003.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.15e-57G2-like family protein